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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaatttatattgttttattgtttttgcagtttatatgatgttgtctatcctatagatggttgtttactgagtttattgcaaatatgcagtgcctatt...

Basic information

species Glycine max
transcript GLYMA12G33800.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208072399|gb|GD869743.1|GD869743
EST:     AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATTGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCG
genomic: AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATAT-GAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCG
EST: gi|208152170|gb|GD944403.1|GD944403
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCATTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATC
EST: gi|209729591|gb|BW651892.1|BW651892
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|209711177|gb|BW676450.1|BW676450
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|254326694|gb|GR832846.1|GR832846
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|192332263|gb|FK023912.1|FK023912
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193431403|gb|FK396029.1|FK396029
EST:     AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATG-AAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193713255|gb|FK653092.1|FK653092
EST:     AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|192296880|gb|FG990241.1|FG990241
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|208304110|gb|GE106515.1|GE106515
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|18690835|gb|BM519683.1|BM519683
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACAT
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACAT
EST: gi|209725723|gb|BW659852.1|BW659852
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|16348906|gb|BI974501.1|BI974501
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|58018472|gb|CX705214.1|CX705214
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|163922893|gb|EH039539.1|EH039539
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|207753684|gb|GD723282.1|GD723282
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTG
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTG
EST: gi|298180119|gb|HO025334.1|HO025334
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAG
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAG
EST: gi|208051726|gb|GD854775.1|GD854775
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAG
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAG
EST: gi|10231294|gb|BE800182.1|BE800182
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATGCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|192332264|gb|FK023913.1|FK023913
EST:     AAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: AAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|207826019|gb|GD797786.1|GD797786
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|192321936|gb|FK012488.1|FK012488
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|192331039|gb|FK020259.1|FK020259
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193338823|gb|FK303120.1|FK303120
EST:     TGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: TGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|10848101|gb|BF070654.1|BF070654
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|15813734|gb|BI786009.1|BI786009
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193313601|gb|FK280452.1|FK280452
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|22521737|gb|BU080548.1|BU080548
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCA
EST: gi|192294937|gb|FG986656.1|FG986656
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|151399284|gb|EV269155.1|EV269155
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|254334704|gb|GR844489.1|GR844489
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|21600800|gb|BQ611131.1|BQ611131
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|254345747|gb|GR859394.1|GR859394
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193385551|gb|FK350773.1|FK350773
EST:     AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACACTCCCATCCG
genomic: AGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAA-GCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACA-TCCCATCCG
EST: gi|15336997|gb|BI497653.1|BI497653
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193429472|gb|FK398102.1|FK398102
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|7234848|gb|AW570181.1|AW570181
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATNTACCCTCCA-CACATCCCATCCG
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACC-TCCAACACATCCCATCCG
EST: gi|151404414|gb|EV274224.1|EV274224
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|254345746|gb|GR859393.1|GR859393
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|209703892|gb|BW670747.1|BW670747
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|208328601|gb|GE126245.1|GE126245
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|207762970|gb|GD734783.1|GD734783
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCAC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCAC
EST: gi|41145511|gb|CK605722.1|CK605722
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193364267|gb|FK332229.1|FK332229
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193585117|gb|FK543808.1|FK543808
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|208199480|gb|GD998181.1|GD998181
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACAC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACAC
EST: gi|7041625|gb|AW471577.1|AW471577
EST:     AAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: AAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|209720644|gb|BW677513.1|BW677513
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTC
EST: gi|10235331|gb|BE804219.1|BE804219
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTTCCACTGCAGCAGAGGCTGATTTACCTCCAAC-CATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193310732|gb|FK277540.1|FK277540
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|208100163|gb|GD899383.1|GD899383
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|207802157|gb|GD774311.1|GD774311
EST:     CAGGCAATGAGAAGAAGGAAGCCGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|207691612|gb|GD675273.1|GD675273
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|192322095|gb|FK012199.1|FK012199
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|5677885|gb|AI939015.1|AI939015
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193483988|gb|FK451957.1|FK451957
EST:     ATCAGTCTATGAAAGCATATGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: ATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
EST: gi|193672356|gb|FK618502.1|FK618502
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATGTGAG                         TCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... tttattgcagTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaatttatattgttttattgtttttgcagtttatatgatgttgtctatcctatagatggttgtttactgagtttattgcaaatatgcagtgcctatt

- - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT