Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCTTGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttttgtattcatggtttatatctagatgatgatgatgactaggccttttatagaataaagattggtatagtactatagtagaaagtccagtaa...

Basic information

species Glycine max
transcript GLYMA12G32850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 3
AACTCTTGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtat-----gacttttgtattcatggtt-tatatctagatgatgatgatgactaggccttttatagaataaagattggtatagtactatagtagaaagtccagtaa
|  |  ||||||| |||||| |||||||||| ||||||||||| ||  | ||| |||||  |||||| ||||| |||||  |||||||  |  | |||||||||     || |  | || | |    | || |  |      || |  | |||| |   |  ||  ||| ||||  | |       |||   |   ||        
AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaagattgctatactgaaacctgtaaaattcttgcgtgcttgttactatgaactgaatctaattaagaaggtttgttctttatgtgaattag--------

upper sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 2
AACTCTTGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttttgtattcatggtttatatctagatgatgatgatgactaggccttttatagaataaagattggtatagtacta-tagtagaaagtccagtaa-----------------------
|  |  |||||||  | ||  | ||||| ||||||||||| |||||  |  ||||||| ||||||||||| ||||| || ||||||||| |||||||||||| ||| | || | ||  |  ||  | | | ||||  ||  ||||   |      | | ||    ||  |  |  | |  ||  | |    |||    | |                       
AGTTGATGGCTGTCCGCATTGTGAAGCACGCTATGGAGATCATTCACCTTCTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatcttatctttcta-ttggtgttt-gatgtggaaaatgaaatgcgacactcttgaggcgagtctaattcaattgtagcaatttttagtggcatgaggcatatcttttatctgctgcag

upper sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 5'ss of exon 2
AACTCTTGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttttgtattcatggtttatatctagatgatgatgatgac-taggccttttatagaataaagattggtatagta-ctatagtagaaagtccagtaa------------
|  |  |||||||  | ||  | ||||| || ||||||||||| ||| |  ||||||||||||||||||||||||| || || |||||| | ||||||||||  |      | | ||  |  | |||||  ||  ||  ||| |||  |   |||||   || |||| ||||  |   |  || |    || |||    |              
AGTTGATGGCTGTCCGCATTGTGAAGCACGCCATGGAGATTATCCATCTCCTGACTGACCAGAACCCCATTCAGGTCATCGTCGATGCTATTATCAACAGgttcgg---acgcaatcccgtgtgatatc--gaacatcctgaggacacaattctttttctgattaaatattgtcaatttgtctctgagcgacagtgttttcccatacattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163082|gb|HO011815.1|HO011815
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|19053070|gb|BM731737.1|BM731737
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298197636|gb|HO045115.1|HO045115
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|19934619|gb|BQ079649.1|BQ079649
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298178410|gb|HO024145.1|HO024145
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCGACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298166705|gb|HO010144.1|HO010144
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|209699234|gb|BW670194.1|BW670194
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298172772|gb|HO020326.1|HO020326
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|207748582|gb|GD720391.1|GD720391
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298169887|gb|HO018511.1|HO018511
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298199446|gb|HO042809.1|HO042809
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|254347062|gb|GR856732.1|GR856732
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|57574861|gb|CX547836.1|CX547836
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298191427|gb|HO038906.1|HO038906
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACGG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|193689237|gb|FK631420.1|FK631420
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|151400398|gb|EV270212.1|EV270212
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|20207721|gb|BQ133810.1|BQ133810
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298164708|gb|HO014353.1|HO014353
EST:     TTGGCTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|4288197|gb|AI441298.1|AI441298
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTG-TGGGAGTTGTAATGA
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGG-AGTTGTAAGGA
EST: gi|151394461|gb|EV264332.1|EV264332
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|213604803|gb|DB960526.1|DB960526
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|254347061|gb|GR856731.1|GR856731
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|13790967|gb|BG653558.1|BG653558
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|31468288|gb|CD410316.1|CD410316
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|213601185|gb|DB956493.1|DB956493
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298166882|gb|HO010321.1|HO010321
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|6718846|gb|AW306493.1|AW306493
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|213589928|gb|DB959483.1|DB959483
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|7691622|gb|AW759746.1|AW759746
EST:     TTGACTGACCAGAACCCCATTCATGTTATTGTAGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCGACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|192294201|gb|FG986290.1|FG986290
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|209714865|gb|BW682030.1|BW682030
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|15204135|gb|BI426903.1|BI426903
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|4397584|gb|AI496581.1|AI496581
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298171177|gb|HO016209.1|HO016209
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTG
EST: gi|7232856|gb|AW568208.1|AW568208
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298193077|gb|HO033511.1|HO033511
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|13251909|gb|BG362812.1|BG362812
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|13789074|gb|BG651675.1|BG651675
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCA
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCA
EST: gi|58015968|gb|CX702710.1|CX702710
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|6913538|gb|AW395068.1|AW395068
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGGTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCATCAAGAATTGGTTCTGCTGGAGTTGTAACGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|33388884|gb|CA852091.1|CA852091
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298187118|gb|HO034267.1|HO034267
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|13482102|gb|BG511445.1|BG511445
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|9564033|gb|BE473542.1|BE473542
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|42722858|gb|CK768757.1|CK768757
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|192301185|gb|FG990165.1|FG990165
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|17963970|gb|BM270712.1|BM270712
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCGACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|20207510|gb|BQ133599.1|BQ133599
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|18730141|gb|BM525707.1|BM525707
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|192333172|gb|FK026501.1|FK026501
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|10232448|gb|BE801336.1|BE801336
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGAGAAGATGCAACAAGAATTGGTTCTGCTGGACTTGTTAAG-A
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGT-AAGGA
EST: gi|213587758|gb|DB955620.1|DB955620
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGGATGCAAACAAGAATTGGTTCTGCTGGAGTTTGTAAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAG-ATGCAA-CAAGAATTGGTTCTGCTGGAGTT-GTAAG
EST: gi|31561794|gb|CD487632.1|CD487632
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|10843914|gb|BF067268.1|BF067268
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|5819946|gb|AI988083.1|AI988083
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|23052301|gb|BU577141.1|BU577141
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|298171534|gb|HO016566.1|HO016566
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|193342972|gb|FK306182.1|FK306182
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGC
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGC
EST: gi|192324473|gb|FK016424.1|FK016424
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|4397518|gb|AI496515.1|AI496515
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATT
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATT
EST: gi|8283253|gb|BE020814.1|BE020814
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAAGA-TTGGTTCTGCT
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAA-GAATTGGTTCTGCT
EST: gi|209696973|gb|BW660538.1|BW660538
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
EST: gi|13787819|gb|BG650411.1|BG650411
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAG                         TGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttt ... gtttattcagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTCTTGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtatgacttttgtattcatggtttatatctagatgatgatgatgactaggccttttatagaataaagattggtatagtactatagtagaaagtccagtaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG