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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctgaagccctttaatattctcctgttaaatgcgtcattttgttcattcctgttttttttatctacttgttttcccctgaattagttggggatt...

Basic information

species Glycine max
transcript GLYMA12G32060.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32060.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 3
GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctgaagccctttaatattctcctgttaaatgcgtcattttgttcattcc-tgttttttttatctacttgttttcccctgaattagttggggatt---
| || ||||||||||| |||||||| |||||||| |||||||| ||||| || ||||||||||   |     ||   ||  || ||||| ||||| |       | ||   || |     |   | ||  | ||  ||   || ||||||   |||        
GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtaacatt----gcttcttcttaatctcccgttaattctaattctgtgccgatgcagcagtagatgtaagtgctgattcagccatgaattgcatggtttcagtt

upper sequence: GLYMA12G32060.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 3
GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctgaagc--cctttaatattctcctgttaaatgcgtcattttgttcattcctgttttttttatctacttgttttcccctgaattagttggggatt
| || ||||||||||| |||||||| |||||||| |||||||| ||||| || |||||||||| | |    | |  | ||   | ||  ||    |    ||| ||    | ||    | |  | | | |  ||      | |  | | |  |  | || | 
GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattcatatctactttctttgtttgccccccatccccgt-atcgaatgcagggtt-tgctctgtgtaaacccaacgttcttttattgtgcggtggctg

upper sequence: GLYMA12G32060.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G361074_T02 (Zea mays), 5'ss of exon 1
----------------------------------------GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctgaagc--cctttaatattctcctgttaaatgcgtcattttgttcattcctgttttttttatctacttgttttcccctgaattagttggggatt
                                        | || ||||||||||| |||||||| |||||||| |||||||| ||||| || |||||||||| | |    | |  | ||   | ||  ||    |    ||| ||    | ||    | |  | | | |  ||      | |  | | |  |  | || | 
CCTCGCTTGTTGTGGCGGTCCGCGTCTGTCTGTTGTGTAGGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattcatatctactttctttgtttgccccccatccccgt-atcgaatgcagggtt-tgctctgtgtaaacccaacgttcttttattgtgcggtggctg

upper sequence: GLYMA12G32060.3 (Glycine max), 5'ss of exon 3
lower sequence: EFJ06425 (Selaginella moellendorffii), 5'ss of exon 2
----------------------------------------GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctgaagccctttaatattctcctgttaaatgcgtcattttgttcattcctgtttttttt-atctacttgttttcccctgaattagttggggatt
                                        | || ||||||||||| |||||||| |||||||| ||||| |||||||| || || ||||||| |    ||||    | |  ||    || ||   |  || |   ||   |   |  | ||| |  ||| |                             
GACAACTGCGCGATTTGCCGGAATCACATCATGGATCTGTGCATCGAGTGCCAGGCAAACCAGGCCAGCGCCACGAGCGAAGAATGCACCGTTGCCTGGGgtaaga---gaaga---tgatcatagctctattggttttgtgacaatgcaaaacacactctttgtggatccag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17152950|gb|BM142883.1|BM142883
EST:     CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG                         G-A
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctg ... cagcagcaagGGA
EST: gi|17023367|gb|BM094401.1|BM094401
EST:     CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG                         G-A
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctg ... cagcagcaagGGA
EST: gi|4396229|gb|AI495226.1|AI495226
EST:     CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGN                         GGA
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctg ... cagcagcaagGGA
EST: gi|6848570|gb|AW350860.1|AW350860
EST:     CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG                         G-A
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctg ... cagcagcaagGGA
EST: gi|7590116|gb|AW705876.1|AW705876
EST:     CCAGGCCAACCAAGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG                         G-A
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctg ... cagcagcaagGGA