Sequence
atgc intronic sequence ATGC exonic sequenceAAAATCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacccaaaatatacccatctttttcaatgtaactttttgtgtcaatcctgttaaaagccgaaaataagactagtatgaggattgacttgaactc...
Basic information
species | Glycine max |
transcript | GLYMA12G32050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G32050.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 2
AAAATCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCT---CGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtc----------acccaaaatatacccatctttttcaatgtaactttttgtgtcaatcct--gttaaaagccgaaaataagactagtatgaggattgacttgaactc--------
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---ACCATGAAGGTGCCTCCGGAGATGACCAAGATCCCAACCAACGCCCCAAGAAGAAGCGCTACCATCGCCACACTCAGCATCAGATCCAGGAAATGGAAGCgttagttctaaaactaaaaccaaaatctaccaactgattctatttcttcttctttttttctttttttgtttctatgaagaaggatctctgatatttc-atctttttgtttttgcacttag
upper sequence: GLYMA12G32050.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ10492 (Selaginella moellendorffii), 5'ss of exon 2
AAAATCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacccaaaatatacccatctttttcaatgtaactttttgtgtcaatcctgttaaaagccgaaaataagactagtatgaggattgacttgaactc
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ATAACATGGATGGGTCTGGAGGGGAGGATCAGGACAATGAGCCGCCGAGGAAGAAGCGCTACCACCGACATACTCCACACCAGATTCAAGAGATGGAAGCgtaagagatt--ggttttggtgttgttctcgattggaagtcctcaaggtggattttttc---ttcgttttctcgcgcag---------------------
upper sequence: GLYMA12G32050.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19972 (Selaginella moellendorffii), 5'ss of exon 2
AAAATCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacccaaaatatacccatctttttcaatgtaactttttgtgtcaatcctgttaaaagccgaaaataagactagtatgaggattgacttgaactc
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ACAACATGGATGGGTCTGGAGGGGAGGATCAGGACAATGAGCCGCCGAGGAAGAAGCGCTACCACCGACACACTCCACACCAGATTCAAGAGATGGAAGCgtaagagatt--ggttttggtgttgttctcgattggaagtcctcaaggtggattttttc---ttcgttttctcgcgcag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18692845|gb|BM521693.1|BM521693EST: AAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGC GTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAGCTGAG
genomic: AAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacc ... tcttcttcagGTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAGCTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAATCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacccaaaatatacccatctttttcaatgtaactttttgtgtcaatcctgttaaaagccgaaaataagactagtatgaggattgacttgaactc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaataa