Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataattgaaaaagtagcttctgtaatctgcttcttagtcactgcttgcatgccactcaatgaactggaaccgtattatggtgttttaaggggcagaggaacaaatattggcttagtcttttatgtgcatcatcctgtaatgaatcttattcttgtttcaatgttcatgatgcag
Basic information
species | Glycine max |
transcript | GLYMA12G31100.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G31100.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G27450.2 (Arabidopsis thaliana), 5'ss of exon 3
GAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataattgaaaaagtagcttctgtaatctgcttcttagtcactgcttgcatgccactcaatgaactggaaccgtattatggtgttttaaggggcagaggaacaaatattggcttagtcttttatgtgcatcatcctgtaatgaatcttattcttgtttcaatgttcatgatgcag
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GAACTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGAGAAGACTTCTTTAAGCGAGCCAAGCCTTACAAGAACCATCCTACCATTGCAAGgtgtgacatt----------gcttatccgatttctaacgcagtaa--agtggaat----ctcgatgtatctatgtactatc-tagtgttttaatggttggatggtttaat-ttaacacag-----------------------------------------------------------
upper sequence: GLYMA12G31100.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0080g00560.t01 (Vitis vinifera), 5'ss of exon 3
GAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataattga---aaaagtagcttctgtaatctgcttc-ttagtcactgcttgcatgccactcaatgaactggaaccgtattatggtgttttaaggggcagaggaacaaatattggcttagtcttttatgtgcatcatcctgtaatgaatcttattcttgtttcaatgttcatgatgcag
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GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgtttcaacccaaacctggcttcta-gatttgctcagctagttggaatgt-catcctcctgtactaattatcttcgtatttttatagcaca-ggaacaaaaggac--atcttgaattcctactacatttacaatttaatcaagttgaacttatg-ttgtacatctgcatgctatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18040291|gb|BM308585.1|BM308585EST: GATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAG AATGCAGAAACTTGCAAAAGAGTTAGGTGTAGTCATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataat ... catgatgcagAATGCAGAAACTTGCAAAAGAGTTAGGTGTAGTCATACCAGTTAGCTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataattgaaaaagtagcttctgtaatctgcttcttagtcactgcttgcatgccactcaatgaactggaaccgtattatggtgttttaaggggcagaggaacaaatattggcttagtcttttatgtgcatcatcctgtaatgaatcttattcttgtttcaatgttcatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT