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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGCGGACAATGGTCAAGAGGAACATGTTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGgtataactcttgcaagatgattgtttgcttctggctcctctgttgatgtacctgttcatagatgcttgtttggtgaattgaactggatcatcatattgac...

Basic information

species Glycine max
transcript GLYMA12G31080.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G31080.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G113073_T01 (Zea mays), 5'ss of exon 3
TAACGCGGACAATGGTCAAGAGGAACATGTTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGgta---taact-cttgcaagatgattgtttgcttctggctcctctgttg-atgta-cctgttcatagatgcttgtttggtgaattgaactggatcatcatattgac
 || || || ||| | || || ||   ||| || || ||| | |||   ||| | || ||||| ||||||||||| || ||||||||||| |||||||| |||   ||| | ||| || |  | || |    |  |      ||| ||| | | | | | ||| ||    | ||||| || | | ||   |  | || | ||    
AAATGCAGAAAATAGCCAGGAAGAGTTTGTGAGAGACCAACTAAATAGTGGAATTGTTCCAGATGGCATTGATGTCCACTGTTTGGCAGGTCTAATTAAAgtaagctaatttctttcatgtagcttatacaatcataatcattctattggaagcatctttttcttaatcacctgtttagtaattaga---gagttattaaatg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925473|gb|AW831499.1|AW831499
EST:     GAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCANGGCTAATTAAG                         GCTTGGTTTANGGAACTTCCTACAGGCATTCTAGATTCA
genomic: GAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGgtataactct ... atttttcaagGCTTGGTTTAGGGAACTTCCTACAGGCATTCTAGATTCA
EST: gi|209716808|gb|BW682250.1|BW682250
EST:     GAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAG                         GCTTGGTTTAGGGAACTTCCTACAGGCATTCTAGATTCATTATCACCCGAG
genomic: GAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGgtataactct ... atttttcaagGCTTGGTTTAGGGAACTTCCTACAGGCATTCTAGATTCATTATCACCCGAG