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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACCATTTTTGAGGGATCCATGACCACAAATTCTACTGCGCCTGTAGTTTTTGGgtgagttttcatgagcctgaaatggttgattctgttcctgttttttcatgtttattgttgttttaatcttggaaagcattggtttttgaatggagcag

Basic information

species Glycine max
transcript GLYMA12G30430.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 5'ss of exon 3
---GGAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACCATTTTTGAGGGATCCATGACCACAAATTCTACTGCGCCTGTAGTTTTTGGgtgagttttcatgagcctg--aaatggttga----ttctgttcctgttttttcatgtt----tattgttgttttaatcttggaaagcattggtttttg-aatggagcag-------
   | ||||||||||||||||||||||| |||||| || || ||||  |  | ||| |||    |||  ||||    |||||| | ||  |  | || |||||||||| |  |||||  |||  |||    |||    ||   |  | ||| | | || ||    | ||| | || |  | ||||||  ||||| |||  |  ||||   |        
ATGGCAGTGGGACATCAGGCTATTATGTATCAGATTTGTTGAATTTTGATGCGATTGTTGGATCATCTGTGACT---AATTCTTCAGCTTCAATTGTCTTTGGgtgagctaccatgaatctgtcaaacctctgagagtttagatggcagttatgttattttggccttttgctcttcttgt-ttggaactcattgatttgggtgatgggttatgagacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405212|gb|EV275026.1|EV275026
EST:     ATTTTTGAGGGATCCATGACCACAAATTCTACTGCGCCTGTAGTTTTTGG                         ATGTAGCAATCAGCAAACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGA
genomic: ATTTTTGAGGGATCCATGACCACAAATTCTACTGCGCCTGTAGTTTTTGGgtgagttttc ... aatggagcagATGTAGCAATCAGCAAACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGA
EST: gi|16349393|gb|BI974988.1|BI974988
EST:     ATTTTTGAGGGATCCATGACCACAAATTCTACTGCGCCTGTAGTTTTTGG                         ATGTAGCAATCAGCAAACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGA
genomic: ATTTTTGAGGGATCCATGACCACAAATTCTACTGCGCCTGTAGTTTTTGGgtgagttttc ... aatggagcagATGTAGCAATCAGCAAACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGA