Sequence
atgc intronic sequence ATGC exonic sequenceGTGGAGAAGACCATATTTTGCCGTATAGAACTTGATGAAGCAAAGGTTAAACAGTTCAAGGATGCAATAGAGAATAATTACTGGTTTGAATTTTTTATGGgtatgttgcactgtttctttctttcacatgttacttagagagttgttagaatggttgtacttctatgtagtgaagaaattttagacactggcaacaattt...
Basic information
species | Glycine max |
transcript | GLYMA12G29120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGAGAAGACCATATTTTGCCGTATAGAACTTGATGAAGCAAAGGTTAAACAGTTCAAGGATGCAATAGAGAATAATTACTGGTTTGAATTTTTTATGGgtatgttgcactgtttctttctttcacatgttact-tagagagttgttagaatggttgtacttc----tatgtagtgaagaaattttagacactggcaacaattt--
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GTCGAGAGAAGTGTCATCTGTCCGCTTGAACTCGATGAAGCTAAGGTCAAGCATTTTAAAGATGCCATTGAATCTAGCTACTGGTTCGAATTTTTTATGGgtatgtttcacg-----tctgttgtacatattaccactgaaattcatgaaaataatgctgatttattatctatgatgttgcaatttc--ctactatgtaaagtttgg
upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 3
GTGGAGAAGACCATATTTTGCCGTATAGAACTTGATGAAGCAAAGGTTAAACAGTTCAAGGATGCAATAGAGAATAATTACTGGTTTGAATTTTTTATGGgtatgttgcactgtttctttctttcacatgttacttagagagttgttagaat-ggttgtacttctatgtagtgaagaaattttagacactggcaacaattt---
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GTGGACAAGGGTGTGATATGTCAACTTGAACTTGATGAAGCAAAGGTCAAACAGTTCAAGGATGCTATTGAGAATAATTATTGGTTGGAATTCTTCGTGGgtatgttctgc-gttatattcttctatatgatgcatgatgaaacttaggtattggctgtcattat-tgaaat--attcgttcaatacacatataaatgccatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193659961|gb|FK606021.1|FK606021EST: GGATGCAATAGAGAATAATTACTGGTTTGAA-TTTTTATGG ATGATCTTCCATTGTGGG
genomic: GGATGCAATAGAGAATAATTACTGGTTTGAATTTTTTATGGgtatgttgca ... acaagttcagATGATCTTCCATTGTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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GTGGAGAAGACCATATTTTGCCGTATAGAACTTGATGAAGCAAAGGTTAAACAGTTCAAGGATGCAATAGAGAATAATTACTGGTTTGAATTTTTTATGGgtatgttgcactgtttctttctttcacatgttacttagagagttgttagaatggttgtacttctatgtagtgaagaaattttagacactggcaacaattt
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