1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAGCGTCGGTTAATGGAGAAGATCCCTGAAATTGTGGCAGTTGAACCAATTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttgtctttcattattaatatgcaagcatatagtatagtgattgagtggacttaattgaacaaataggatgaaaaagatataatttttaattat...
species | Glycine max |
transcript | GLYMA12G28900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|120534155|gb|EH262288.1|EH262288
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|254347086|gb|GR856756.1|GR856756
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|192306232|gb|FG996846.1|FG996846
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|254347085|gb|GR856755.1|GR856755
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|120533173|gb|EH261306.1|EH261306
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCEST: gi|42723234|gb|CK769133.1|CK769133
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTC
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|120534084|gb|EH262217.1|EH262217
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|192301803|gb|FG994455.1|FG994455
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|151398076|gb|EV267954.1|EV267954
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTTEST: gi|192306231|gb|FG996845.1|FG996845
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
EST: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAG GTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
genomic: TTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttg ... actgtttcagGTTCTTGAGGAAATGAGACCCTACTTGGTTGGGGCTGCTGATGGAACTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCGTCGGTTAATGGAGAAGATCCCTGAAATTGTGGCAGTTGAACCAATTGCTGATGAAGAAACTGGTCTTGAGCTCAATGAAGATAATATAGAGAAGgttacttttgtctttcattattaatatgcaagcatatagtatagtgattgagtggacttaattgaacaaataggatgaaaaagatataatttttaattat
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaga