Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttctttctttctttccatttcacgcttttccttttttaattttatcttcatttttgtgattttctcttttcag

Basic information

species Glycine max
transcript GLYMA12G28670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 4
GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgttt-ctttctttctttccatttcacgcttttccttttttaattttatcttcatttttgtgattttctcttttcag
||||| || |||||||| || |||||||| || |||||||||||||| || || |||||||||  |    | ||| |  ||| | |||    | |||  |   |  | |  | ||| |   || |   ||| |   | |||
GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaacattcatggttttccttttgttcctttgttgcatagagtgaaactt-acagttata--tttgttgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299444|gb|FG990782.1|FG990782
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|24136950|gb|BU927460.1|BU927460
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|298172183|gb|HO021775.1|HO021775
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192315107|gb|FK009931.1|FK009931
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGT-ATCAACGCTTTGTTCTCATCTTCTGCCATTGAT
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGA-CAACGCTTTGTTCTCATCTTCTGCCATTGAT
EST: gi|6134030|gb|AW132480.1|AW132480
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192333250|gb|FK026131.1|FK026131
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213618494|gb|DB963395.1|DB963395
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|298184141|gb|HO029354.1|HO029354
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|41145772|gb|CK605983.1|CK605983
EST:     GGAACCGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|254316505|gb|GR828042.1|GR828042
EST:     GTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213604365|gb|DB970597.1|DB970597
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGG
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGG
EST: gi|24135648|gb|BU926158.1|BU926158
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213587115|gb|DB959536.1|DB959536
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|7233496|gb|AW568841.1|AW568841
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209709460|gb|BW668376.1|BW668376
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAAACGCTTTGTTCTCATCTTCTGCCATTGAT
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAA-CGCTTTGTTCTCATCTTCTGCCATTGAT
EST: gi|298191545|gb|HO039024.1|HO039024
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTTTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|208215289|gb|GE011072.1|GE011072
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|6134008|gb|AW132458.1|AW132458
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|15814101|gb|BI786376.1|BI786376
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttctttctttctttccatttcacgcttttccttttttaattttatcttcatttttgtgattttctcttttcag

- - - - - - - - - - - - - - - - - -  AGAGCA