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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaataacttacaatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcag

Basic information

species Glycine max
transcript GLYMA12G17950.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 2
TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaataacttacaatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcag
| |  ||||| || || ||||| || ||  | ||||| || || |||||||| |||||||| || ||||| ||||||||||||||||| || ||||| |||||||  |     ||||     |  |  |||     | | |||   |||| |   | |  || ||| |                                                        
TTTTCTTTGCTGGCATCATTGTTATCTGCCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatc----ttaaatttctttatcttacattcttactga---tgtgacattttgttacaatttag-------------------------------------------------------

upper sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G130987_T02 (Zea mays), 5'ss of exon 3
TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaataacttacaatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaa--acttgtatgaattctctcattatgttgcag
| |  ||||| || || ||||| || ||||||||||| || || |||||||| |||||||| |||||||| ||||||||||||||||| || ||||| |||||||  |  | | |   | | |   ||| ||      |||    |  |||    |     || ||       |    | ||||| ||  || |   |||  ||| |                   
TTTTCTTTGCTGGCATCATTGTCATCTGTTTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgtt----ctgtt-------ccacttagtcttataataagactgctttcatgtag------------------

upper sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaataacttac--aatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcag
| |  ||||| ||||| ||||| || ||| | ||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||| || ||||| |||||||    | | ||||   | |      || | | | ||| |   |     |  | ||   ||| ||   |  |  || | ||  || |     ||||   |  ||   |               
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaag----catattaagggcctgtttggttcactacctcagttgccacactttgccta---acttttctgcctaaggt-tagttattcaattcgaact---actaacctt---------------

upper sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 2
TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaataacttacaatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcag
| |  ||||| || || ||||| || ||| ||||||| || || |||||||| ||||| || |||||||| ||||||||||||||||| || ||||| |||||||  |            |||  | || || |  | |||||  |  |||    | | |  ||  |   | | |      ||||| ||  |                                
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcat------------cttggacttaatccttttattgatgtgctgttctgttgcacttaaagcttataataagaattctttcatgtag-------------------------------

upper sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 5'ss of exon 3
TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaata-acttacaatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcag
|||  || || || || ||||| || ||| | |||||| | || ||||| || |||||  | ||||| ||||||||||| ||||||||||| ||||| ||||| | |   || |   ||  | | |||||      |  | |||  ||| |         | | | |  ||     || || |     ||  ||| ||     | | | | ||  |||||     
TCTTCTTCGCTGGAATCATTGTTATCTGTCTTGATGAGTTGCTACAGAAGGGTTATGGACTGGGATCCGGAATTTCTCTTTTCATTGCCACCAATATCTGgtaggctcagttttctttatgcctgcaattc---ttagaaatgaagttgag---------agccaatatac---tcgtctgcttgcgaattgaaatct-----ggagtttatctctatgt-----

upper sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 5'ss of exon 3
TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaataacttacaatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcag
| |  || || || |||||||| || ||| |||||||| |  | ||||| || |||||  | || || ||||||||||||||||| ||||| ||||| ||||||| | | ||              || ||||| |  |    | |   ||   | | | |  ||   | |  |||   |||  |  ||  ||    ||||  ||         || ||     
TGTTCTTCGCCGGAATTATTGTTATCTGTCTGGATGAGTTGTTACAGAAGGGTTATGGGCTTGGGTCAGGAATTTCTCTGTTCATCGCCACGAATATCTGgtaagctattttt-------------atatattcga--aaaaggttcacgt---acaaataggataacaaactctgctaggttgtggatttaa----tgtacaaagatgaatgctacgtact--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207847060|gb|GD817753.1|GD817753
EST:     GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATG                         TGAAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGAC
genomic: GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttc ... tatgttgcagTGAAAA-CATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGAC
EST: gi|26045713|gb|CA783213.1|CA783213
EST:     GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
genomic: GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttc ... tatgttgcagTGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
EST: gi|18041345|gb|BM309639.1|BM309639
EST:     GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
genomic: GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttc ... tatgttgcagTGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
EST: gi|37996558|gb|CF808147.1|CF808147
EST:     GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATAT--G                         TGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
genomic: GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttc ... tatgttgcagTGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
EST: gi|17519265|gb|BM188307.1|BM188307
EST:     TTCTCTGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGTCCCACCACCATTAACAGTGGACG
genomic: TTCTCTGTTCATTGCCACTAATATATGgtaagttttc ... tatgttgcagTGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
EST: gi|298169258|gb|HO020618.1|HO020618
EST:     GGGTATGGTTTAGGATCTGGAATCTCTCTGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
genomic: GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttc ... tatgttgcagTGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
EST: gi|193597430|gb|FK550544.1|FK550544
EST:     GGGTATGGTTTAGGATCTGGAATTTCTCCGTTCATTGCCACTAATATATG                         TGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG
genomic: GGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttc ... tatgttgcagTGAAAACATCATATGGAAAGCATTTAGCCCCACCACCATTAACAGTGGACG