Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATCTGGTGAATTTGGTTGGATATAGTGCTGAAAAGGGGCAACGTATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatctatctttttccatgagatgcatagactgttcttctgtacaaacttttgcccctgaatctgctcctgcaaacatgtatctatacgca...

Basic information

species Glycine max
transcript GLYMA12G16650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 3
AGGAATCTGGTGAATTTGGTTGGATATAGTGCTGAAAAGGGGCAACGTATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatctatctttttccatgagatgcatagactgttcttctgtacaaacttttgcccctgaatctgctcctgcaaacatgtatctatacgca-------------
||||| ||||||||||||||||| ||| | |||||||| ||||| | ||||||  |||||| || ||||  ||| || ||| | ||||| ||||| ||| |||  ||||     |||||   |  |||| | ||||    |  | |  || |  ||| | |||||     | |  |  |       | | |  |||  |              
AGGAACCTGGTGAATTTGGTTGGCTATTGCGCTGAAAAAGGGCAGCATATGCTATTATATGCATTCATGCCTAATGGAAGCCTTGCATCGCACTTATATGgtat-tcat-----tatctccat--atgata-gcatgctatactttcttgaaagaacctgtgccctcagttttttttttttttggctttcttaatatcctttttatggtttag

upper sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 3
AGGAATCTGGTGAATTTGGTTGGATATAGTGCTGAAAAGGGGCAACGTATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAgtaagtcatctatctatctttttccatgagatgc---ata-gactgttcttctgtacaaacttttgcccctgaatctgctcctgca--aacatgtatctatacgca
|| || || |||||||||||||| ||| |||| |||||||| || | ||||||| ||||||| ||||||||||| || || ||||| || || |||||| |||||    | ||| | || | || ||   || |   ||   | ||      |||| |    ||  | ||||| ||     | | |  | | ||| |||       
AGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGgtaagctggcaatc-aactctctctattttattctctatgcaagtgacaagttgtaaattggttgacacctgactccttaacaggattagcgtgtgtctga-----