Sequence
atgc intronic sequence ATGC exonic sequenceAATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaatgatttttttgtacacttgttaattgtttaaaatcctagacatgataagattgggtgcttccatttttcaactgcgccaactttgtatatattaaccttatattaacttgttcttttattcag
Basic information
species | Glycine max |
transcript | GLYMA12G14060.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 3
AATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaatgatttt-----tttgtacacttgttaattgtttaaaatcctagacatgataagattgggtgcttccatttttcaactgcgccaactttgtatatattaaccttatattaacttgttcttttattcag
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AATAGAAACAATAGCAACTTATGATTCAGAAACAAGAGAGTTCATCATAAATACTCCATGTGAATCAGCTCAGAAGTACTGGATTGGTGGAGCTGCCAATgtaagaattaagaaaatgtgtgcatctgcactctgcattcagtcaca-acttgctaaagatttccatgccc-ttttgcag----------------------------------------------------
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 3
AATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaa-tgatttttttgtacacttgttaa--ttgtttaaaatcctagacatgataagattgggtgcttccatttttcaactgcgccaactttgtatatattaaccttatattaacttgttcttttattcag
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AATTGAAACAGTGACTACTTATGACCCAACAACTGAAGAGTTTGTGATAAATACTCCTTGTGAATCTGCTCAGAAGTATTGGATCGGTGAGGCAGCTAACgtaagtagtcactatgcttaactcccacactcatctgctatct---ac-tgacttgttgatatactttggttgttcag----------------------------------------------------
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 3
AATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaatgatttttttgtacacttgttaattgtttaaaatcctagacatgataagattgggtgcttccatttt-tcaactgcgccaactttgtatatattaaccttatattaacttgttcttttattcag
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AATTGAAACAGTGACAACTTATGACCCAAAAACTGAAGAGTTTGTGATAAATACTCCTTGTGAATCTGCTCAGAAGTATTGGATTGGTGGGGCAGCTAATgtaagtagtcatt-gtccctatcctgagtgta------cctaaatact-----------tgtttctatttagttcaccctcctgatttgtcatatactaattttgtgatatact-tttggttgttcag
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 5'ss of exon 3
AATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaatgatttttttgtacacttgttaattgtttaaaatcctagacatgataagattgggtgcttccatttttcaactgcgccaactttgtatatattaaccttatattaacttgttcttttattcag-------
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TATTGAAACAGTTACCACATATGACTCAAAAACTGGAGAGTTTGTTATTAACAGTCCCTGTGAATCAGCTCAGAAGTACTGGATAGGAGGAGCAGCAAATgtaaggaatttttctattactttttctttgttgtttttccttttgctaatttgcacactctatctgttgttttaatggttcctacttcagct---tcaattctgtactgacatgttttttgtaacattgtttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16996251|gb|BM085623.1|BM085623EST: ATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAAT CATGCCACGCACACTATAGTCTTT
genomic: ATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaatgattt ... ttttattcagCATGCAACGCACACTATAGTCTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTGAAACAGTCACTACTTATGATTCAAACACCGGGGAATTTGTCATCAATACTCCATGTGAATCGGGTCAGAAGTATTGGATTGGTGGTGCAGCAAATgtaatgatttttttgtacacttgttaattgtttaaaatcctagacatgataagattgggtgcttccatttttcaactgcgccaactttgtatatattaaccttatattaacttgttcttttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG