Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACTATTGAAAGAGCTCATATGCCGAAAGATTTGTGGGAAAGAGTAAAGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtggatcatgtagtctagtcttttaacatatttaagtattcaatgttttacttgttagtcattgtcaggattggttgtgtgcttgaactttctgcattggcag

Basic information

species Glycine max
transcript GLYMA12G14000.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193481770|gb|FK446889.1|FK446889
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193697396|gb|FK641114.1|FK641114
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|151406980|gb|EV276795.1|EV276795
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|207824445|gb|GD793441.1|GD793441
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193621397|gb|FK566839.1|FK566839
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|207747095|gb|GD720752.1|GD720752
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193396002|gb|FK361421.1|FK361421
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|18041381|gb|BM309675.1|BM309675
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|207790009|gb|GD761300.1|GD761300
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|207712629|gb|GD694387.1|GD694387
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTT
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTT
EST: gi|208263533|gb|GE061133.1|GE061133
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAG
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAG
EST: gi|193567244|gb|FK524701.1|FK524701
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|207695636|gb|GD678587.1|GD678587
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|17518730|gb|BM187772.1|BM187772
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|208193955|gb|GD994238.1|GD994238
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTTATTGGCCCAAAC
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGT-ATTGGCCCAAAC
EST: gi|208292464|gb|GE091570.1|GE091570
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|207729934|gb|GD706486.1|GD706486
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193666282|gb|FK610591.1|FK610591
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ACGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|298164306|gb|HO013951.1|HO013951
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|208192116|gb|GD992400.1|GD992400
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|207685783|gb|GD669115.1|GD669115
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|208238531|gb|GE036259.1|GE036259
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATACACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193492027|gb|FK453443.1|FK453443
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTT
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTT
EST: gi|193670864|gb|FK613700.1|FK613700
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCCTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193497351|gb|FK458259.1|FK458259
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|208156179|gb|GD952821.1|GD952821
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAA
EST: gi|193688847|gb|FK627838.1|FK627838
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193310285|gb|FK273691.1|FK273691
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193353439|gb|FK323645.1|FK323645
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCC-AAACTT
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTT
EST: gi|193355796|gb|FK323447.1|FK323447
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGCTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
EST: gi|193719717|gb|FK652271.1|FK652271
EST:     AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTG                         ATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA
genomic: AGCTTCCTAGGAATTACGAGAAGGCACTTGAAATCATAGATAAACATCTGgtactgtgga ... gcattggcagATGTATTGGCCCAAACTTCTTATACACAAGATAAAGCAACGTTTGACCAAA