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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAAAATGGACAAGAAGAACAACTTGCACAGAGTATATTATATCAATGAATACAGATAACATATCAAGATCTAGTAGTACTTACATTGGAAAACTGAGgtaagacttaatttttggtactcgtttgggacctacttgacattcattttgcactaacaatcattgaattgtttaag

Basic information

species Glycine max
transcript GLYMA12G13060.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G13060.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g36190.1 (Oryza sativa), 5'ss of exon 4
CTGCAAAATGGACAAGAAGAACAACTTGCACAGAGTATATTATATCAATGAATACAGATAACATATCAAGATCTAGTAGTACTTACATTGGAAAACTGAGgtaa--gacttaatttttggtactcgtttgggacctacttgacattcattttgc---actaacaatcattgaattgtttaag--------
| || ||| ||    | | |||||| |||||||| ||| |||| |||||| || |||| ||||| |||||||| || || || || ||||||||||| ||||||  |  ||   |   | |  |         | | |    |||| ||||      || ||| | | |||   ||| |           
CCGCTAAAAGGCACCGCAAAACAACCTGCACAGAATATGTTATCTCAATGGATGCAGACAACATTTCAAGATCAAGCAGCACCTATATTGGAAAACTAAGgtaactgttttgtgtgcagatggtacacctttcctttcgctccatttatttgatgatacaaaccaaccttgttgtgtctttcatttttag

upper sequence: GLYMA12G13060.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0072g00630.t01 (Vitis vinifera), 5'ss of exon 3
CTGCAAAATGGACAAGAAGAACAACTTGCACAGAGTATATTATATCAATGAATACAGATAACATATCAAGATCTAGTAGTACTTACATTGGAAAACTGAGgtaag-----acttaatttttggtac--tcgtttgggacctacttgacattcattttgcactaaca-atcat-tgaattgtttaag---------------
|||||||| | |  || ||||| ||||||||||| ||| | || || ||| || | ||||||||||||||||| || || ||||| ||||| || ||||||||       ||   ||||||  |||  |  |||   |   | |  |    |||    |  || ||   ||| |||| | |   |                
CTGCAAAACGAAACAGGAGAACTACTTGCACAGAATATGTAATCTCCATGGATGCCGATAACATATCAAGATCAAGCAGCACTTATATTGGGAAGCTGAGgtagatgaatacaccatttttcttaccattcttttacattcagtaaatgcccatca-actttatcatggcatgtgaactatgccatatttttgtgtgtccc