Sequence
atgc intronic sequence ATGC exonic sequenceAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCgtaagttttcccaaataaaccccaatttcgtgatatttttttgataccagaaatagttctgttcatgtcagataaaaaattcttttttgagtatttaagttcaaacttaaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcag
Basic information
species | Glycine max |
transcript | GLYMA12G10710.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G10710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 2
AAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCT---CGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCgtaagttttcccaaataaaccccaatttcgtga-tatttttttgataccagaaatagttctgttcatgtcagataaaaaattcttttttgagtatttaagttcaaacttaaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcag
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---ACCATGAAGGTGCCTCCGGAGATGACCAAGATCCCAACCAACGCCCCAAGAAGAAGCGCTACCATCGCCACACTCAGCATCAGATCCAGGAAATGGAAGCgttagttctaaaactaaaaccaaaatctaccaactgattctatttcttcttctttttttctttttttgtttctatgaagaaggatctctgatatttcatctttttgtttttgcacttag---------------------------------------------
upper sequence: GLYMA12G10710.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ10492 (Selaginella moellendorffii), 5'ss of exon 2
AAAACCATGAAGGTGCCTCT-GGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCgtaagttttcccaaataaaccccaatttcgtgatatttttttgataccagaaatagttctgttcat-gtcagataaaaaattcttttttgagtatttaagttcaaacttaaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcag
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-ATAACATGGATGGGTCTGGAGGGGAGGATCAGGACAATGAGCCGCCGAGGAAGAAGCGCTACCACCGACATACTCCACACCAGATTCAAGAGATGGAAGCgtaag-------agattggttttggtgttgttctcgattggaagtcctcaaggtggattttttcttcgttttctcgcgcag-----------------------------------------------------------------------------------
upper sequence: GLYMA12G10710.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19972 (Selaginella moellendorffii), 5'ss of exon 2
AAAACCATGAAGGTGCCTCT-GGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCgtaagttttcccaaataaaccccaatttcgtgatatttttttgataccagaaatagttctgttcat-gtcagataaaaaattcttttttgagtatttaagttcaaacttaaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcag
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-ACAACATGGATGGGTCTGGAGGGGAGGATCAGGACAATGAGCCGCCGAGGAAGAAGCGCTACCACCGACACACTCCACACCAGATTCAAGAGATGGAAGCgtaag-------agattggttttggtgttgttctcgattggaagtcctcaaggtggattttttcttcgttttctcgcgcag-----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207727012|gb|GD702936.1|GD702936EST: AAGAAGCGTTACCACCGCCACACCCAACACCATATCCAAGAAATGGAAGC TTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAG
genomic: AAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCgtaagttttc ... tgttttgcagTTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCgtaagttttcccaaataaaccccaatttcgtgatatttttttgataccagaaatagttctgttcatgtcagataaaaaattcttttttgagtatttaagttcaaacttaaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG