1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatcttatttctgctgtttgcatatatcattataatctcatttttttgctgattaatttggttgatgtttcgatgtag
species | Glycine max |
transcript | GLYMA12G10510.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCA GTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGA-TTGAAAEST: gi|209704750|gb|BW676067.1|BW676067
genomic: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatctt ... ttcgatgtagGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
EST: CTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCA GTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAEST: gi|209696942|gb|BW660507.1|BW660507
genomic: CTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatctt ... ttcgatgtagGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
EST: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCA GTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAEST: gi|18040023|gb|BM308317.1|BM308317
genomic: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatctt ... ttcgatgtagGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
EST: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCA GTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAEST: gi|23730734|gb|BU763465.1|BU763465
genomic: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatctt ... ttcgatgtagGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
EST: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCA GTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAEST: gi|58017380|gb|CX704122.1|CX704122
genomic: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatctt ... ttcgatgtagGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
EST: GGCAGGCT-AAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCA GTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAEST: gi|213601006|gb|DB983681.1|DB983681
genomic: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatctt ... ttcgatgtagGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
EST: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCA GTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
genomic: GGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatctt ... ttcgatgtagGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGAGGCAGGCTGAAGCATCTCGAATAAGAGAGAAGTATCCTGACAGAATTCCAgtaagatcttatttctgctgtttgcatatatcattataatctcatttttttgctgattaatttggttgatgtttcgatgtag
- - - - - - CTGAAG
- - - - - - TGAAGC
- - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - AGAAGT