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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAGCAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctcactctctattaattgattaatttctctctttttgaatttacttttgataccataatgaaccaaagtataattaaacaataaacaggcaac...

Basic information

species Glycine max
transcript GLYMA12G10210.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691759|gb|AW759880.1|AW759880
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|298183030|gb|HO028293.1|HO028293
EST:     GCCATTTGAGGCAGTGGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|31456519|gb|CD398547.1|CD398547
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|213618025|gb|DB963658.1|DB963658
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|23064258|gb|BU579031.1|BU579031
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|298182663|gb|HO031398.1|HO031398
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|192316108|gb|FK007169.1|FK007169
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|192305211|gb|FG993963.1|FG993963
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|13788666|gb|BG651257.1|BG651257
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|27425967|gb|CA937487.1|CA937487
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|209725576|gb|BW677878.1|BW677878
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|209725577|gb|BW677879.1|BW677879
EST:     AGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: AGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|298193194|gb|HO033628.1|HO033628
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|192299092|gb|FG990406.1|FG990406
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|31474066|gb|CD416094.1|CD416094
EST:     GCCATTTGAGCCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|209702927|gb|BW667449.1|BW667449
EST:     AGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: AGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
EST: gi|31312023|gb|CD397226.1|CD397226
EST:     GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTC                         CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA
genomic: GCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctc ... tattcaacagCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAGCAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCgtgagccctcactctctattaattgattaatttctctctttttgaatttacttttgataccataatgaaccaaagtataattaaacaataaacaggcaac

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