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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAgtactactctgtctctctctctctcacttctccatctttgaccaatccatatccatagatgcttaaaactagcgcaacttcaataatatcccaatctttt...

Basic information

species Glycine max
transcript GLYMA12G09430.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09430.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g37170.8 (Oryza sativa), 5'ss of exon 2
CAGCTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAgtactactctgtctctctctctctcacttctccatctttgaccaatccatatccatagatgcttaaaactagcgc---aacttcaataatatcccaatctttt------------------------------------
|||  |   |  |||  |||||  |   |||||||||||| ||||| ||||||||||||||    |  ||     ||       ||  |  |   |||||   ||| |   |  |||   ||   | | ||   |  |   |  ||||  || |      ||| | ||    | || | | |                                     
CAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGTgtaagcactgcttctcttgatcagtaa-cagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcag

upper sequence: GLYMA12G09430.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g37170.3 (Oryza sativa), 5'ss of exon 3
---CAGCTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAgtactactctgtctctctctctctcacttctccatctttgaccaatccatatccatagatgcttaaaactagcg---caacttcaataatatcccaatctttt------------------------------------
   |||  |   |  |||  |||||  |   |||||||||||| ||||| ||||||||||||||    |  ||     ||       ||  |  |   |||||   ||| |   |  |||   ||   | | ||   |  |   |  ||||  || |      ||| | ||    | || | | |                                     
CAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGTgtaagcactgcttctcttgatcagtaa-cagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcag

upper sequence: GLYMA12G09430.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g37170.6 (Oryza sativa), 5'ss of exon 1
--------------------CAGCTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAgtactactctgtctctctctctctcacttctccatctttgaccaatccatatccatagatgcttaaaactagcgc---aacttcaataatatcccaatctttt---------------------------------
                    |||  |   |  |||  |||||  |   |||||||||||| ||||| ||||||||||||||    |  ||     ||       ||  |  |   |||||   ||| |   |  |||   ||   | | ||   |  |   |  ||||  || |      ||| | ||    | || | | |                                  
CATTTGTATGTATGCAGCAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGTgtaagcactgcttctcttgatcagtaa-cagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatag

upper sequence: GLYMA12G09430.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 4
CAGCTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAgtactactctgtctctctctctctcacttctccatctttgaccaatccatatccatagatgcttaaaactagcgcaacttcaataatatcccaatctttt-
   |||||||||||| ||||||| | || || |||||||||||||| |||||||||||||||||||||||||||  ||||||| |  |||   ||| |  |  |  ||| | |||   | |||     |   | | |    ||     ||    ||||||   |  | | | | |  |   
---CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAgtagttttctccatctttgaccatttctttttcattaataaccttaatactgcaacatcctctctggtctc-tacaactttccttctcttctactggtgct