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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGGAGATTGGTCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGgtaataatcatcatttaagttcctttcctttttctggtttgcagttcttgtatctggggcattgactgctcaatgggcccctttggaaagtgataatata...

Basic information

species Glycine max
transcript GLYMA12G07300.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07300.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G147623_T01 (Zea mays), 5'ss of exon 10
TGCTGGAGATTGGTCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGgtaataatcatcatttaagttcctttcctttttctggtttgcagttcttgtatctggggcattgactgctcaatgggcccctttggaaagt--gataatata---
|||||| |||||| |     |   | | |||||| | || |||||| | || |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| ||     || |||| |  || ||    |   ||   |  | || |  |         | | | |  |  ||    |  ||  |  |||  | |  ||||   
TGCTGGTGATTGGGCTAATCTCAATTCAGACACATTACTTTTTGATGTGTGTTGTGGGACTGGAACTATTGGCCTGACCTTAGCACAGCGTGTTGGAATGgtgatt----tcttttacgccccgtttggatcattgtaattgaatt-tcattctaataatagtaatttatgcatatatcaattaagctagttcggtgttatacaa

upper sequence: GLYMA12G07300.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G28450.2 (Arabidopsis thaliana), 5'ss of exon 10
TGCTGGAGATTGGTCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGgtaataat-catcatttaagttcct-----ttcctttttctggtttgcagttcttgtatctggg-gcattgactgctcaatgggcccct----ttggaaagtgataatata----------------------------------------------------------
||||||||| ||| |   | | ||||| |||||  |||| || ||| |||||||||| || ||||||||||| || ||| | |||||||| ||||| ||||||||| |  |  | || |  |            |    |   |    |  | || ||| |||  | |   | |   | |||   | ||     ||| ||   | | || |                                                          
TGCTGGAGACTGGGCTGACCTTGGTCCCGACACTTTGCTCTTCGATGTATGCTGTGGAACTGGAACAATTGGGCTTACACTGGCACATCGTGTTGGCATGgtaatactgtactacttgaacttgcaaaaccgaatagcaccaatccttacctgtt-tatttggttgaagcaagtatactatgtttcactagttctggtaaccaaaactagaaaagtgtgtacaactggtgctgtcttagttttggttataactttttagagacttgcag

upper sequence: GLYMA12G07300.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g02940.t01 (Vitis vinifera), 5'ss of exon 10
TGCTGGAGATTGGTCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGgtaataatcatcatttaagttcctttcctttttctggtttgcagttcttgtatctggggcattgactgctcaatgggcccctttggaaagtgataatata--
|||||| |||||| |  | || |||||||| ||  ||||||||||| |||| |||||||| |||||||||||||| || ||||||||||| ||||||||||||||| ||| |    ||  ||  |    |||  |   ||       |  | ||||      |  ||| |  |     ||   |    | || |  |     
TGCTGGGGATTGGGCTGGTTTGGGTCCTGATACCTTGCTATTTGATGTATGTTGTGGGACTGGAACAATTGGCCTTACCTTAGCACATCGTGTTGGTATGgtaatactcacccaccaatgtctatgaactttagtttcttttgaacttgttttctgacattgtatctgatggaca--tccaaatattcaatgctcgtgcgac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322340|gb|FK014581.1|FK014581
EST:     GCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATG                         GTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCGCATAGGAAT
genomic: GCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGgtaataatca ... attatttcagGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCGCATAGGAAT