1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCTAACATGAGAATTTTGATTACGGGAGGAGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGgtcagctgattagtttattgtgtttttgagtagttttgtttttcttttcaacgattctattatgcttacaaaacataacttctaatcag
species | Glycine max |
transcript | GLYMA12G06990.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAAEST: gi|12774402|gb|BG239329.1|BG239329
genomic: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGgtcagctgat ... ttctaatcagGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAA
EST: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAAEST: gi|213593306|gb|DB973555.1|DB973555
genomic: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGgtcagctgat ... ttctaatcagGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAA
EST: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAAEST: gi|16277140|gb|BI942224.1|BI942224
genomic: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGgtcagctgat ... ttctaatcagGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAA
EST: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAA
genomic: TCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGgtcagctgat ... ttctaatcagGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAACATGAGAATTTTGATTACGGGAGGAGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGgtcagctgattagtttattgtgtttttgagtagttttgtttttcttttcaacgattctattatgcttacaaaacataacttctaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA