Sequence
atgc intronic sequence ATGC exonic sequenceTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttggttgatatctttctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgcttgtctaatcag
Basic information
species | Glycine max |
transcript | GLYMA12G06980.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 3
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 3
TCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttggttgatatctttctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgcttgtctaatcag
|| |||||||| ||| || | | |||||||||||||| ||||| |||||||| ||||| || |||||||||| ||||| ||||||||| || |||| || | | | | || || | || | |||||| | | || | | | | ||
TCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGATAAGCTGATGGAAAACGAAAAGAATGAGgtttgc---attgaaattcctatccgatacaatagtagtttatgcgcgatttgattaagtac--tgatgt-ttatatttttttttaccag-----------------
upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 3
TCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttggttgat--atctt-tctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgctt-gtctaatcag-------------------------------------------
|||||||||||||| |||| ||||||||||||||||| ||||| || || | || ||||| |||||||||||||||| ||||||||| || ||||| | ||||| || ||| | ||| | | ||| | | | | | | |||| || | || ||||| || ||| | | | |
TCCAATATGAGAATATTGGTCACTGGAGGAGCTGGATTCATTGGTTCACATTTGGTGGACAAGCTGATGGAAAATGAAAAGAATGAGgttagcatggttttttcatcttatccagtctcactttctgtgctgattactgaataggcgacaaaaatataa-accataatcatatgcagcagctgacttcatacatactgtatgataagaagatcgtgtttgataatagttttacttccttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207697729|gb|GD681214.1|GD681214EST: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAA-TGAG GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAA-
genomic: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttgg ... gtctaatcagGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttggttgatatctttctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgcttgtctaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA