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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataattttactgttctcttcattgcaatcattcacagactgggattaatttgatggtttattctcaattgttctaaatcagtcaccaatgtagagcag...

Basic information

species Glycine max
transcript GLYMA12G06980.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 4
GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataattttactgttctcttcattgcaatca-ttcacagactgggattaatt--tgatggtttattctcaattgttctaaatcagtc---accaatgtagagcag
|||||||| || |||||||| |||||||| || ||||||||||| || || ||||| || || |||||||| |||||||| |||||||||||   |  | |       ||| |||| | | ||||   |||    |||  |  |  |  |  | | | | |  |   || |   |     | ||  | ||| | 
GTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATGgtattgctacatt------ctcagtgcatttagttcatgaactattgttacatactagtaataaagttttactgctagcaagttttttcgttcaaaatttgagaaa

upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 3
GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgta--taattttactgttctcttcattgcaatcattcacagactgggattaatttgatggtttattctcaattgttctaaatcagtcaccaatgtagagcag--
|||||||||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| |||||||| ||||| || ||||||||||  ||| |     | | |   ||||  |   |||   || ||    |   ||| |  |  |  |   | || |      |   |   |||||   |  |   
GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataactagttagctatgcacatttaagatattttaagtct----tctctttcagaggatcctgaaagttatgaaccctggatagtcaatgataaataaac

upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 4
GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgta--taattttactgttctcttcattgcaatcattcacagactgggattaatttgatggttt--attctcaattgttctaaatcagtcaccaatgtagagcag
|||||||||||||| ||||| |||||||| || ||||| ||||| || || ||||| || || |||||||| ||||| || || |||||||  ||| |     |   |      |  |  ||||   || |     ||  |  |||| |    |   | |    | ||  || || ||   ||  | |    
GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATGgtaaataactagttagacatgcatgcttaagacattttaagtcctccctt--tcagatgatcctgaaagttatgcatcctggattagacaatgataaataaa--

upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 3
------------GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataattttactgttctcttcattgcaatcattca-cagactgggattaatttgatggtttattctcaattgttctaaatcagtcaccaatgtagagcag
            || || ||||| || || | |||||| ||||| |||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||| | |  ||  |   || ||   | | | | |  |  |    |  ||    |||  ||| |    ||| || | | |   |||              
GAAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatagtat--cttcttaattaatcaaacttacttaatactcattaaccaaaacaatgcattaatactcattcttgtgattttttcag-------------

upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataattttactgttctcttcattgcaatcattcacagactgggattaatttgatggtttattctcaattgttctaaatcagtcaccaatgtagagcag
|| ||||||||||| ||||  |||||||| || || ||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||  ||||    ||||||   |||       |         ||| || |    |  ||| ||||      || ||  |  ||      | ||   |||
GTGATTGTTGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGgtatggttttgaaattctctggcttgttgctgctattgagaatggaatattcctgtcttttgttctatccatttatattttggttttgggtttaa--cag

upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 4
GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataattttactgttct--cttcattgcaatcattcacagactgggat---taatttgatggtttattctca-attgttctaaatcagtcaccaatgtagagcag
|| |||||||| || |||| |||||| || ||||| ||||| || || ||||||||||| ||||||||||| ||||| |||||||||||||   ||||  | || |  || ||||  | |   ||||| |     ||   | ||||| | |    ||   | ||   |  | || | ||   | ||        
GTAATTGTTGCCGATAACTACTTCACCGGTTCTAAGGACAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTTATTCGTCATGgtaagttttttatctttttactccattttattttatcacatatgcatatgcgtcatttgtttggaatttgggatatcccttcagatgaatcctgattggt------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208312127|gb|GE107347.1|GE107347
EST:     C-ACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG                         ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
genomic: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataatttt ... ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
EST: gi|213606684|gb|DB959073.1|DB959073
EST:     CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG                         ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
genomic: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataatttt ... ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT