1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttggttgatatctttctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgcttgtctaatcag
species | Glycine max |
transcript | GLYMA12G06980.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAGTGAG GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAAEST: gi|192298392|gb|FG989143.1|FG989143
genomic: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttgg ... gtctaatcagGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAA
EST: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAAEST: gi|207697729|gb|GD681214.1|GD681214
genomic: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttgg ... gtctaatcagGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAA
EST: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAA-TGAG GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAA-EST: gi|192330026|gb|FK020842.1|FK020842
genomic: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttgg ... gtctaatcagGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAA
EST: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGNNNNNNNTGAG GTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAA
genomic: TTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttgg ... gtctaatcagGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGgttggcttggttgatatctttctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgcttgtctaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA