Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttttttttgaatttgtgattttgctttgatttgaactacatgaaagtgatgttttctgttcaatttttgcag

Basic information

species Glycine max
transcript GLYMA12G06960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06960.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 3
CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttttttttgaatttgtgattttg--ctttgatttgaactacatgaaagtga--tgttttctgttcaatttttgcag---------
 || ||||||||||||||||| || ||||| || ||| ||||||| || || ||||| ||  |||| ||||| ||||||||  | |||||||||||||||| ||  ||| |   | |   ||  ||||   ||||| |   || |   ||   ||   ||   ||   |   || |||||          
TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAACAGTCCTCCAACAGTGAAGTTTACTTCAGAAGTGTGGCATCCCAATGgttggttgtttgtccaactgcatgtgtttgatttttgactcttaccattggagcatggcttgaaatcaacttggttcttgcatgaattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193440547|gb|FK409508.1|FK409508
EST:     AGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298170658|gb|HO019282.1|HO019282
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|27425977|gb|CA937497.1|CA937497
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|209702411|gb|BW656387.1|BW656387
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|17022209|gb|BM093243.1|BM093243
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|15337487|gb|BI498143.1|BI498143
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|27426740|gb|CA938260.1|CA938260
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|207801092|gb|GD774137.1|GD774137
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|151400067|gb|EV269881.1|EV269881
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|13252164|gb|BG363067.1|BG363067
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|33389826|gb|CA853033.1|CA853033
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGANATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTNATCCTNCTGNAGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298173257|gb|HO020241.1|HO020241
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|151397271|gb|EV267144.1|EV267144
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|33387309|gb|CA850516.1|CA850516
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|209705175|gb|BW673715.1|BW673715
EST:     ACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: ACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|14259958|gb|BG882866.1|BG882866
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|19268884|gb|BM885140.1|BM885140
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|193486453|gb|FK449642.1|FK449642
EST:     ATAGTCCACCTTCAGTTAAGTTTCTACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: ATAGTCCACCTTCAGTTAAG-TTC-ACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|11688939|gb|BF596677.1|BF596677
EST:     AATAGTCCACC-TCAAGTTAAGTTCACTTCAAAGATATGGCATCCCAATG                         TATATCCCGATGCCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AATAGTCCACCTTC-AGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|20498658|gb|BQ273588.1|BQ273588
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|298182923|gb|HO028136.1|HO028136
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|20498754|gb|BQ273684.1|BQ273684
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|209704114|gb|BW673714.1|BW673714
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
EST: gi|209702412|gb|BW656388.1|BW656388
EST:     AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATG                         TATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG
genomic: AAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGgttagtgttt ... atttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGG