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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGATGCAGAAGTATATTGGCTCGGATGTAACATCAATGGTGACATTACCTGTTATTATATTTGAACCAATGACTATGATTCAGAAAATTGCTGAGgtcggcttactcttagttttgccattgttgatgataccttaatctgtagtgtcaattgattgaatttgaaaattgaaattgcttgaaatag

Basic information

species Glycine max
transcript GLYMA12G06690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
GAAGATGATGCAGAAGTATATTGGCTCGGATGTAACATCAATGGTGACATTACCTGTTATTATATTTGAACCAATGACTATGATTCAGAAAATTGCTGAGgtcggc-ttactcttagttttgccattgttgatgat-accttaatctgtagtgtcaattgattgaatttgaaaattgaaattgcttgaaatag-------
|||||||||||| ||||| || || || ||||| |||||| | |||||| | || || || || ||||| |||||||| ||| |||||||||| ||||||||  |   ||   |  |  ||    || ||||   | ||  |   |        |    |  ||  | || || |      | ||||   |         
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa

upper sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGATGATGCAGAAGTATATTGGCTCGGATGTAACATCAATGGTGACATTACCTGTTATTATATTTGAACCAATGACTATGATTCAGAAAATTGCTGAGgtcggctt---actcttagttttgccattgttgatgatacct-taatctgtagtgtcaattgattgaatttgaaaattg-aaattgcttgaaatag
||||||||||||||| ||||| || |||||| | || |||||||||||  | |||||| |||||||||| || ||||||||| | ||||| || ||||||||  |  |   ||   || || | |  |  |||    ||  | |  | | | ||||  | ||  |   | | | | ||| ||||| ||   |    
GAAGATGATGCAGAAATATATAGGTTCGGATATTACGTCAATGGTGACTCTTCCTGTTGTTATATTTGAGCCTATGACTATGCTCCAGAAGATGGCTGAGgttagtgttatacatctaattctcctgtgtttgtaagtatttgttgttttttgtgtgtactgtat---tataacatttgcaaatttctcacag---

upper sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 3
GAAGATGATGCAGAAGTATATTGGCTCGGATGTAACATCAATGGTGACATTACCTGTTATTATATTTGAACCAATGACTATGATTCAGAAAATTGCTGAGgtcggcttactcttagttttgccattgttgatgat-accttaatctgtagtgtcaa--ttgattgaatt--tgaaaattgaaattgcttgaaatag
|||||||||||| |||||||| || || ||||| || |||||||||||| | || ||| | || ||||| |||||||| ||| |||||||||| || || ||  | |  |   ||||||    |   |||||| | | |||  |   | || || |   || || || |  || ||||||  | ||||||  | ||
GAAGATGATGCAAAAGTATATAGGTTCAGATGTCACCTCAATGGTGACACTTCCAGTTCTGATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAAgtatg-tgccatctagtttgtataagtttgatgtttatcttggtagattgtctctagcctgtttcaaatgttgcaaattgtgaatgcttgtgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193682919|gb|FK625067.1|FK625067
EST:     TATATTTGAACCAATGACTATGATTCAGAAGATTGCTGAG                         TTGATGGAGTACTCCTACTTGTTAGATCAAGCAGATGAATCAGAGGATCCA
genomic: TATATTTGAACCAATGACTATGATTCAGAAAATTGCTGAGgtcggcttac ... cttgaaatagTTGATGGAGTACTCCTACTTGTTAGATCAAGCAGATGAATCAGAGGATCCA