Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACGAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAGgtatattttttgctattgttcattttatgctgccacactgaagaatcaaatttgattattttattatcattggcag

Basic information

species Glycine max
transcript GLYMA12G06450.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06450.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 2
TTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACGAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAGgtatattttttgctattgttcattttatgctgc--cacactga-agaatc--aaatttgattattttattatcattggcag-------
| |||||| | ||||| || || ||  | |||||||| || || || ||||| || ||||||||||| || ||||||||||||||||||||||| || |||||||| ||     || |    |||| |||| |   |  || | || |||    | ||||| || | |||| |||   |         
TGGATGAAGGCTTTGCCTCCTCACTACTTGAAGAGTTCAAGAGTAACAAAACCAAATGTTTTGAGCTTTCAGAAATTGCTGGTCATGTTGTTGAGTTTAGgtatatgttgc-tcatagagatttttgtgctacgttattctaatagtatcctgcaattgat-atgtgattaacatcttctatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208071638|gb|GD870984.1|GD870984
EST:     ACGAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAG                         TGCGGATCAATACGGGAGTCGATTTATTCAACAAAAGACTTGAAACAGCTA
genomic: ACGAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAGgtatattttt ... tcattggcagTGCGGATCAATACGGGAGTCGATTTATTCAACAAAAG-CTTGAAACAGCTA