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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGgtaaccattagtctttaaattaattattttctttcattaatcttgcatgagaaatagttggtaatgccgtaatggtatattgcag

Basic information

species Glycine max
transcript GLYMA12G06430.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 3
AACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGgtaaccattagtctttaaattaattattttctttcattaatcttgcatgagaa-atagttggtaatgccgtaatggta--tattgcag-------------------------------------------
||| || || |||||||| |||||||||||||| ||||||||||| || || || ||  |||||||||| ||||| |||||||| |||||  | |||||||||   | |  |||||   ||   |  || ||| |||      |  ||| |    ||  ||   |     | ||  |   ||||  |                                            
AACGGCCACAACAGAAGAGAAAAACATGGTTTACCAGGAAATCATTCCCCAAGCTCTCTCTTTGATGACAGATGTGTTTGGTAACTATGTTATACAAAAGgtatgaaattctcttttcgttgcatgatt-cttgcatgcgcgctatatgtgtgtgtatctgcacacattattattattattattatataattttaaatggttttacatttgcaactgtttctaattttcag