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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagcagtgcttacctagattttcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctactaacctccttta...

Basic information

species Glycine max
transcript GLYMA12G04830.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g44050.1 (Oryza sativa), 5'ss of exon 3
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagcagtgcttacctagatt--ttcctatcgtatgtgttatgttaccc-ctaattttgctggagaattattggtttgtaacctactaacctccttta
 |||||||| |||||||| || || ||||||||||| || ||||| ||||||||  | ||||| || || || || || |||||||| ||||| || || ||  |  |    |  |  ||   | |  ||| | || |    |    |  |     ||  |  | |   |         ||||||      | |     |   
ATATGTGAACAAGAAGTTCAGCAACCAGTACAAGGCTACGATTGGCGCGGATTTCCTCACCAAGGAGGTTCAGTTCGAGGATAGGCTCTTCACTTTGCAAgtaagatatttcttttcccccgcactggttcttctcctcatcgcgccgagattaattaggtccgttcatgggaagcgaatttgtatgagcttgattagtt---

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G811797_T01 (Zea mays), 5'ss of exon 3
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttg-tgagcagtgcttacc-tagattttcctatcgtatgtgttatgttacccctaattttgctggaga-attattggtttgtaacctactaacctccttta
 |||||||| |||||||| || || ||||||||||| || ||||| ||||||||  | ||||| || ||||| || || || ||||| |||||  | || ||  | |  |     ||  || ||     | |  |  | || |    ||||    |  ||  ||       |     | || |||   |  |||     |   
ATATGTGAACAAGAAGTTCAGCAACCAGTACAAGGCTACGATTGGGGCGGATTTCCTCACCAAGGAGGTGCAGTTCGAGGACAGGCTCTTCACTCTGCAAgtaagattggttaccctagccgtatgccgtgccgtgatctgggagtagttatgtttctttacgccaacttcagccccgattagtactttcttaattagtt---

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G158887_T02 (Zea mays), 5'ss of exon 2
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagcagtgcttacctagattttcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctactaacctccttta-
 |||||||| |||||||| || |||||||||||||| || || || ||||||||  | ||||| || ||||| || || || ||||| |||||  | || ||  |   |     | || | | ||  |  |  |||         ||    |    | ||   |   | ||| |  ||| | |  || |   |   |||| 
ATATGTGAACAAGAAGTTCAGCAATCAGTACAAGGCTACGATCGGCGCGGATTTCCTCACCAAGGAGGTGCAGTTCGAGGACAGGCTCTTCACTCTGCAAgtaagattggttcccctatccatatgctg-tgccgtgctccgcgagtagttcggtttctttacgtcaacttagtactttattaattagtttgcgaatttat

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G18820.1 (Arabidopsis thaliana), 5'ss of exon 2
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagcagtgcttacctagattttcctatcgtatgtgttatgttacccc-taattttgctggag--aattattggtttgtaacctactaacctccttta-----------------------------------------------------
|||||| ||||| ||||| || || ||||||||||||||||||||||| || || || ||||| ||||| || ||||||||| | |||||||| |||||||||  | |  |||||||   ||| |  ||      ||| | || ||        |  || ||||      ||   ||    | |     | | ||||   ||                                                      
GTATGTTAATAAAAAGTTCAGCAACCAGTACAAGGCAACCATTGGAGCCGACTTCTTGACCAAGGAAGTACAGTTTGAAGATCGACTTTTCACTTTACAGgttcct-actagtgctttattagttagtcactcaatattttttttgaagtaagatgcttgtgctcagctcaacctttcacatttgtgtgaattacctttcttgcttgagctcactcacttgttcctgtctttactttgtcaatgtgtttattacag

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G49300.1 (Arabidopsis thaliana), 5'ss of exon 3
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtga--gcagtgcttacctagattttcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctactaacctccttta---
 ||||| ||||||||||| || || ||||| |||||||| ||||| || ||||| || || || ||||| |||||||||||  |||||||||| ||||||||||||    |||| ||||    ||     |   || | | | |||| ||| | |  | || |    ||    | |  || ||  |  |  ||        |   
ATATGTTAATAAGAAGTTCAGCAACCAGTATAAGGCAACTATTGGGGCTGATTTCTTGACTAAGGAAGTTCAATTTGAAGACCGGCTTTTCACTTTACAGgtttgttgtggcagcgctttatcagtaaacc---tcttttattttattttagcgc--agttggtataagttagactccttagtggcagaggaaaacttggaataa

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0063g02420.t01 (Vitis vinifera), 5'ss of exon 4
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagcagtgcttacctagattttcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctacta-acctccttta---
 |||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| || || |||||||| || ||||||||||| ||||| ||||||||| ||||  | |  | |  |   |  ||   | | |     | ||| | |    ||| |    | |      || |    ||     |   | |  |||    
ATATGTGAATAAGAAGTTTAGCAATCAATACAAGGCAACTATCGGAGCTGATTTTTTGACGAAGGAAGTGCAGTTCGAAGATAGGCTCTTCACTTTACAGgttagtga-taattttgagtttcttgctcaactggcaaaaact-tgtaagctt--attgtatgcgggggcgtgtgttccaaaattcgatgtgcttgatttggca

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S398_18V6.1 (Physcomitrella patens), 5'ss of exon 2
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagcagtgcttacctagattt-tcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctactaacctccttta-
|||||| || |||||||| || || ||||| ||||| || |||||||| |||||||| || |||||||||||| | ||||| |||||| ||||  | |||||  || | |  ||  | |  |  |   | || |  |   ||||     |     |   ||| |         |  |   |||  ||  ||        |  
GTATGTTAACAAGAAGTTCAGCAACCAGTATAAGGCCACGATTGGAGCAGATTTTTTGACAAAAGAAGTGCAAGTCGAAGACAGGCTTGTCACAATGCAGgtcagtaatctctgtgtgctgatctacattcttttctgaatgttggcccagtgtga--cttgttcccatcccctgagccggtagactgatatgaattcatgg

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ15497 (Selaginella moellendorffii), 5'ss of exon 3
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgt---ttgtgagcagtgcttacctagattttcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctactaacctccttta
 |||||||||||||||||||| || ||||||||||| || |||||||| |||||| | ||||| || || ||| | || || |||||  | ||  | |||||   | |||| |  ||||     | | |||| |      |  |   ||  |    |  |||| | |                                    
ATATGTGAATAAGAAGTTTAGCAACCAGTACAAGGCTACTATTGGAGCCGATTTTCTCACCAAGGAGGTTCAAGTGGAGGACAGGCTAGTGACGATGCAGgtgggtcgtgatctttgctccaaaaaaatttctttcttcttacgaattgggattt-tggttttccag------------------------------------

upper sequence: GLYMA12G04830.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ24755 (Selaginella moellendorffii), 5'ss of exon 3
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgt---ttgtgagcagtgctt--acctagattttcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctactaacctccttta
 |||||||||||||||||||| || ||||||||||| || |||||||| |||||| | ||||| ||||| ||| | || || |||||  | ||  | |||||   | |||| |  ||||   |   | ||| |    || | |     ||        |  |||| | |                                    
ATATGTGAATAAGAAGTTTAGCAACCAGTACAAGGCTACTATTGGAGCCGATTTTCTCACCAAGGAAGTTCAAGTGGAGGACAGGCTAGTGACGATGCAGgtgggtcgtgatctttgctccaaaaaaaattctttcttcttcttacgaattgggattttggttttccag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395955|gb|EV265832.1|EV265832
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|298170698|gb|HO019322.1|HO019322
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|7327033|gb|AW620831.1|AW620831
EST:     GATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: GATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|192293888|gb|FG986097.1|FG986097
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|151394139|gb|EV264010.1|EV264010
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|22523596|gb|BU082407.1|BU082407
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|192316350|gb|FK006725.1|FK006725
EST:     ATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|192306549|gb|FG996225.1|FG996225
EST:     A-TTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|5605783|gb|AI899881.1|AI899881
EST:     TTTTTTAACCAAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: TTTTTTAACC-AAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|298170472|gb|HO019096.1|HO019096
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|7234414|gb|AW569752.1|AW569752
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|9819515|gb|BE555028.1|BE555028
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|18732514|gb|BM527086.1|BM527086
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|22523615|gb|BU082426.1|BU082426
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|151403516|gb|EV273326.1|EV273326
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|209707640|gb|BW683433.1|BW683433
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|9204488|gb|BE330712.1|BE330712
EST:     ATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|13788955|gb|BG651546.1|BG651546
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|16346461|gb|BI972056.1|BI972056
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|192323041|gb|FK015227.1|FK015227
EST:     NNNNNNNAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAACTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: -TTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|254315215|gb|GR830208.1|GR830208
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|254315216|gb|GR830209.1|GR830209
EST:     CCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: CCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|298178736|gb|HO024471.1|HO024471
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|23729936|gb|BU763073.1|BU763073
EST:     ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|7284766|gb|AW597316.1|AW597316
EST:     ATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|14999954|gb|BI320768.1|BI320768
EST:     TTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: TTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
EST: gi|27426792|gb|CA938312.1|CA938312
EST:     ATTTTTTAACCAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAG                         ATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC
genomic: ATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagc ... aactttacagATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGgtttgtgagcagtgcttacctagattttcctatcgtatgtgttatgttacccctaattttgctggagaattattggtttgtaacctactaacctccttta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctt