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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggtttttctttgtcttttctatttcatagatatttgtggttgtttatagaatggctttgcagaattatattagagttgttacgaatcccttttcaataatttgttcttgttgtaatttcatag

Basic information

species Glycine max
transcript GLYMA12G04820.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 3
GTTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggtttttctttgtcttttctatttcatagatatttgtggttgtttatagaatggctttgcagaattatattagagttgttacgaatcccttttcaataatttgttcttgttgtaatttcatag
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GTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAGgt---gaattttatagtgttttaattttcttcattttgaggtatgttaatttacatgatg-catcatggaaacata----ggtcctt-----ccttttataaatgatctatttttgcacaaaatttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208253489|gb|GE054277.1|GE054277
EST:     TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTTCG
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCT-CG
EST: gi|209696738|gb|BW660435.1|BW660435
EST:     TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: gi|209720618|gb|BW677326.1|BW677326
EST:     TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: gi|209703331|gb|BW683311.1|BW683311
EST:     TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: gi|193609379|gb|FK561207.1|FK561207
EST:     TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: gi|193411617|gb|FK378598.1|FK378598
EST:     AATCAGGGAGAGACATTTACAAAG                         ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
genomic: AATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG