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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAAGATTTAATACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttacatgcttcaacttcattcctattcgttagttaattaaatattataccaaattcatttatttaggctattggaatgtgtcaggtcacttattttattgtatttatttctgcatacag

Basic information

species Glycine max
transcript GLYMA12G04670.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04670.4 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g04760.t01 (Vitis vinifera), 5'ss of exon 3
TTTGCAAGATTTAATACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgt-tagagttagttacatgcttcaacttcattcctattcgttagttaattaaatattataccaaattcatttatttaggctattggaatgtgtcaggtcacttattttattgtatttatttctgcatacag
| ||||||||||| | ||||| ||||||||  |  ||||||| || |||||||| |||||||| || || ||||| || ||||||||||| ||||| |||||  || |  |   | |  | ||||  | | | | |     ||   |   | ||||    |||  ||  |  ||| || ||| |      | ||    |||||  |  |  |                   
TCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcca--cagactcatcaatcttaatac-acaaaatatagatacacatatatctccatgttgctgaattcagtctaat------tatcgaaccactttgtaaacag-------------------

upper sequence: GLYMA12G04670.4 (Glycine max), 5'ss of exon 3
lower sequence: EFJ21812 (Selaginella moellendorffii), 5'ss of exon 3
TTTGCAAGATTTAATACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttacatgcttcaacttcattcctattcgttagttaattaaatattataccaaattcatttatttaggctattggaatgtgtcaggtcacttattttattgtatttatttctgcatacag
                               ||| | || ||||| |  |||||||||||||| |||||||| || ||||| || || || |||||||||||     |     |  || |    ||  ||   | | ||  ||||   |     ||| ||||                                                                    
-------------------------------GTTACTGGAAAAGCCGTGATGCTTGATGAAATCATTAACTACGTCCAGTCGCTCCAGCGTCAAGTTGAGgtacagctcgtcgaagtgttgattctcaatgtatttacgcgagttttct-----ttaaaccag-------------------------------------------------------------------

upper sequence: GLYMA12G04670.4 (Glycine max), 5'ss of exon 3
lower sequence: EFJ34195 (Selaginella moellendorffii), 5'ss of exon 5
TTTGCAAGATTTAATACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttacatgcttcaacttcattcctattcgttagttaattaaatattataccaaattcatttatttaggctattggaatgtgtcaggtcacttattttattgtatttatttctgcatacag
                               ||| | || ||||| |  |||||||||||||| |||||||| || ||||| || || || ||||||||||| | || | ||   |   || |   ||| |  ||||     |  | ||   | ||| ||||                                                                    
-------------------------------GTTACTGGAAAAGCCGTGATGCTTGATGAAATCATTAACTACGTCCAGTCGCTCCAGCGTCAAGTTGAGgt-acagctcgtcgaagtgttgattctcagtg-tatttac--gcgagttttct-ttaaaccag-------------------------------------------------------------------