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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAACAGACTAATAAGGAGGACGAGGCTGAACTTTACAAGCCAAAAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAGTATGgtatttagtgtttgtcaaatgctcctgctcctgcctaatgaaaccaacttagtccactcttttcattttcttttcggttgggccttttcagtttggtggtggaagag

Basic information

species Glycine max
transcript GLYMA12G04370.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04370.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0139g00280.t01 (Vitis vinifera), 5'ss of exon 2
-CTGAA---CAGACTAATA-AGGAGGACGAGGCTGAACTTTACAAGCCAAAAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAGTATGgtatttagtgtttgtcaaatgctcctgctcctgcctaatgaaaccaacttagtccactcttttcattttcttttcgg--ttgggccttttcagtttggtggtggaagag
    ||   ||  | ||   | || ||  |  | ||  | |||||||  || |||||||| ||||| || |||||||||||  |||| || |||||||||||||| |||||  ||||| |  |    |  | ||  ||   |||  |  || ||| || ||   |  | ||||| |||   |  ||  ||   |   | |||| || ||     
TTCAAATCCCAAGCCAACCCAAGATGATAACTCGGATTTGTACAAGCTGAAGGTTTCTACATGGGGGGTTTTTCCTAGACCCAGCAACATCTCAAAAACAgtatgatattttctgtttctaca----ttttact--tgagaaattgatgcatcttggttcatgttgctgattttgtttctaggattaagctact---gattggaggggg-----

upper sequence: GLYMA12G04370.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g01030.t01 (Vitis vinifera), 5'ss of exon 2
-CTGAA---CAGACTAATA-AGGAGGACGAGGCTGAACTTTACAAGCCAAAAGTTTCTACCTGGGGTGTCTTTCCTAGACCTGGCAATATTTCAAAAACAGTATGgtatttagtgtttgtcaaatgctcctgctcctgcctaatgaaaccaacttagtccactcttttcattttcttttcggttgggccttttca-gtttggtggtggaagag
    ||   ||  | ||   | || ||  |  | ||  | ||||||||||| |||||||| ||||| || |||||||||||   ||| || |||||||||||||| |||||  ||||| |  |    |  | ||  ||   |||  |  || ||| |  ||   |  | ||||| |||   |||||    |   | ||  ||  ||||     
TTCAAATCCCAAGCCAACCCAAGATGATAACTCGGATTTGTACAAGCCAAAGGTTTCTACATGGGGAGTTTTTCCTAGACCCAACAACATCTCAAAAACAgtatgatattttctgtttctaca----ttttact--tgagaaattgatgcatcttggctcatgttactgattttgttt---gttggattatgctatgtgagggagtggg----