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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgtgtcattcttttttgcttttctttttttaaataatttcttgccaagataataagattcaatacaatttgaataaacttcttcaatctgttgtt...

Basic information

species Glycine max
transcript GLYMA12G04220.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 3
lower sequence: AT4G34650.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgt----gtcattcttttttgcttttctttttttaaataa-----tttcttgccaagataataagattcaatacaatttgaataaacttcttcaatctgttgtt
||||||| || ||| ||  |   ||  |||| || ||||| |||||||| || ||||||||||| || ||| |||| ||||| ||||||||| |||         |  |||||    | ||    ||| | || |     |||  |   ||  |||| |   |  || |||||| |                       
AGGATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaataagaagagacttttcacatcttaacctttcagatgaaattcttttcttttaacttaattactcttcattcaattttag----------------------

upper sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 3
AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgtgtcattcttttttgcttttctttttttaaataatttcttgccaagataataagattcaatacaatttgaataaacttcttcaatctgttgtt--
|||||||||| |||||    ||||||||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| ||||| ||| ||||||||  |      || ||||     | ||| |||   |  |||    |||   |  | |  |    |    || |    |    ||  |   |  ||||  
AGGATGATACAAGCATTCGTACAGATGTCAAAGTGCCTATTCTGATAGCTTTTCATCGTCATATATATGACCGTGACTGGCATTTTGCATgtgaggatcatgaactcttttcaccgtatttgttt--ctcttttgcaaccatatttcttatttgtggtttctttggttccacaaactggagaatactgtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726826|gb|BW672513.1|BW672513
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGAC
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgtgt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGAC
EST: gi|151410377|gb|EV280192.1|EV280192
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgtgt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA
EST: gi|15284765|gb|BI468656.1|BI468656
EST:     ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCAT                         GTGGCACAAAAGAGTACAAAGTTCTAATGGAACAGTTTCATCATGTTTCAA
genomic: ACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgtgt ... atgtgactagGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAA