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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTATTGGGGAGATTGCAAACTTTGTTGCTTATATCTATGCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGgtactctagctttaattaaaattttgattgttttgatgaattttgtgtttgtgtggattgtagaactaacatatccggtatgtgttgctag

Basic information

species Glycine max
transcript GLYMA12G03390.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03390.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g50180.1 (Oryza sativa), 5'ss of exon 3
TGATTATTGGGGAGATTGCAAACTTTGTTGCTTATATCTATGCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGgtactctagctttaattaaaattttgattgttttgatgaattttgtgtttg--tgtggattgtagaactaacata---tccggtatgtgttgctag---------
|| |  |||||||||| |||||||| |||||||||| || ||| || || || || || ||||||||||| ||||| || || || || ||||  | |   |  ||  |||   || | |    |  | |    | | ||||  | |    | ||    | |||||   |  | | | | |  | |          
TGTTGCTTGGGGAGATAGCAAACTTCGTTGCTTATACCTTTGCACCAGCCGTACTTGTGACTCCCCTTGGGGCACTAAGCATAATCGTAAGgtgatttttttcaaaccaaagccttaagttcagtagtcagcactatctttgattctcctatatatggttgacatacattttgttttttttctccaatttggacag

upper sequence: GLYMA12G03390.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 3
TGATTATTGGGGAGATTGCAAACTTTGTTGCTTATATCTATGCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGgtactc---tagctttaattaaaattttgattgttttgat-----------------gaattttgtgtttgtgtgg-attgtagaactaacatatccggtatgtgttgctag
||||| |||| ||| |||||||||||||||| ||  | |||||||| ||||||||||| || |||||||||||  | ||||| ||| | ||||| |     || |      ||  | ||| ||||  | |                  ||||||| | ||| | |   ||| |||||||||||| |  | ||| |||   |||
TGATTGTTGGAGAGGTTGCAAACTTTGTTGCCTACGTTTATGCTCCAGCAGTTCTGGTGACCCCCCTTGGTGCGTTGAGTATAATTATTAGgtaataatgcaggtgcttcaaaggtcttgtttgtgctaaattattaaaataaaagtggaattttctttttctcttttattttagaactaacatgtttgatatatgtgaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606385|gb|AI900539.1|AI900539
EST:     GCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAG                         TGCTGTTTTGTCTCACTCCTTGCTGAAGGAACGGCTTCCGAAGATGGGGGT
genomic: GCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGgtactctagc ... gtgttgctagTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGT