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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGAACTTGGATTCACATTTTCTTTCCCTGTGAAACAAATGTCTGTTTCCTCTGGCATTTTATTAAAATGGACAAAAGGGTTTTCCATTGTAGATTTGgttagttcgttggctttcaatcaatttgaatatgaaaaacttatattcatagagatcttgaactgaaggagtttttgacaataccaaagctatatatttgaatttgaataatataacaaatattaagtgcaaaaactgtttgttgtcag

Basic information

species Glycine max
transcript GLYMA12G02450.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
AAGGGAACTTGGATTCACATTTTCTTTCCCTGTGAAACAAATGTCTGTTTCCTCTGGCATTTTATTAAAATGGACAAAAGGGTTTTCCATTGTAGATTTGgttagttcgttggctttcaatcaatttgaatatgaaaaacttatattcatagagatcttgaactgaaggagtttttgacaataccaaagctatatatttgaatttgaataatataacaaatattaagtgcaaaaactgtttgttgtcag
|||||||||||| || ||||| ||||| |||||||| ||||  |||||||| || |||||| || | |||||||||||| | |||||| |   |||  ||||||||  |      ||| |  || ||  |      |   ||   | || |   || || ||||  |   |     |  | |   | || | | |     | ||                                             
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaacttatactcttga---ttgc-tccacaacaattttaaactttaatgg---aagggactgatagagttgttttgaaaagttcct------------------------------------------