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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGAAAATATATTGAAGGAATCTGTAAATTACCAAGTCATTTCTCCGAAGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttacactaattttcatgactggtttcccactatgtactctgcagttctccccccctcccaacctttatggagaaggggattttttttctgtttttatttatgctagttttgcttcgattttgttcactttattgctattattgttgttgcttagtgtttttaatttttgtttattttggatag

Basic information

species Glycine max
transcript GLYMA12G02310.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401729|gb|BM178511.1|BM178511
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|209721615|gb|BW671744.1|BW671744
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|19269489|gb|BM885745.1|BM885745
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|207809034|gb|GD781332.1|GD781332
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCAGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCCGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|208146318|gb|GD948423.1|GD948423
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAACAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|209719968|gb|BW659407.1|BW659407
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|209696858|gb|BW680480.1|BW680480
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|10231486|gb|BE800374.1|BE800374
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|208104287|gb|GD905860.1|GD905860
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|7588705|gb|AW704495.1|AW704495
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|208319353|gb|GE115922.1|GE115922
EST:     TCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: TCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|192300938|gb|FG992998.1|FG992998
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|14990551|gb|BI316224.1|BI316224
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|192326972|gb|FK019234.1|FK019234
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCGAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|151395539|gb|EV265416.1|EV265416
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTT-CTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGAACTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|193559042|gb|FK514583.1|FK514583
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|151399889|gb|EV269760.1|EV269760
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|192324541|gb|FK016792.1|FK016792
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|11687857|gb|BF595533.1|BF595533
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|193510142|gb|FK472114.1|FK472114
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|7233437|gb|AW568783.1|AW568783
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|193402088|gb|FK370191.1|FK370191
EST:     GGTATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAAGACCTCTGGATCTGGCACTCTTATTCG
genomic: GG-ATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATG-AG-CCTCTGGATCTGGCACTCTTATTCG
EST: gi|193556283|gb|FK515692.1|FK515692
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCT
EST: gi|213606575|gb|DB972510.1|DB972510
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|27426119|gb|CA937639.1|CA937639
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
EST: gi|151394250|gb|EV264121.1|EV264121
EST:     AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTG                         TGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT
genomic: AGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttaca ... ttttggatagTGCAAAGGAAAGAAATTTCATGAGCCTCTGGATCTGGCACTCTTATTCGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGAAAATATATTGAAGGAATCTGTAAATTACCAAGTCATTTCTCCGAAGGATCTAGCAAAATCTATTTTATCTGAAGCAGGCTGGTCAAATTTTCTGgtatgttacactaattttcatgactggtttcccactatgtactctgcagttctccccccctcccaacctttatggagaaggggattttttttctgtttttatttatgctagttttgcttcgattttgttcactttattgctattattgttgttgcttagtgtttttaatttttgtttattttggatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC