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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattttgtggctcttgctgtctgattagaatttcattcaagtttttgtgttgctgcttatcaatgatgtatattttgttgtgcatgttgtag

Basic information

species Glycine max
transcript GLYMA12G01380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 4
GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattttgtggct-cttgctgtctgattagaatttcattcaagtttttgtgttgctgcttatcaatgatgtatattttgttgtgcatgttgtag------------------------------------------
  |  |||||||||||||||| ||||||||||||| | | || || || ||  |||||| ||| ||||| |||||||||||||| |||||||  |||||||| ||  |  |    || ||   | | |     |||  | ||   | ||||     |  |  | |  |||| || |  |       ||||     ||                                           
TCTCCTGAAAGGTCGCAATGCGTGGTATGGGCAAATGCTAGCGAAGGGAGAACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgt-tatctcataaaactactcattattttccccgaaagttatatgaattttgagcgtatttttgaagaatgctggaagtcaaaacttgcaaaagatatcacatcatcctggatataacctgttcacttttcactctacag

upper sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g41590.1 (Oryza sativa), 5'ss of exon 3
GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattttgtggctcttgctgtc--tgattagaatttcattcaagtttttgtgttgctgcttatcaatgatgtatattttgttgtgcatgttgtag----
  || |||||||||| ||||||||||||||||| || || || || || ||  |||  ||||||||||| ||||| ||||||||||| ||||| || |||||      |   |   |  || |||   |  ||  |   |  |    || ||| || ||| |  || | |||   ||   |||| |||| || || |      
ACTGCTGAAAGGTCGTAATGCATGGTATGGGCAGAAATTAGCTAAGGGTGAACTGACTCTTGAAATGGGGGACAGTATCAAGGGCAAAGGGACTATCCAGgttggtgctaccttcttaatgatgtaaatctttccatacttctgggtgtgtttttggtgccgaatagccatgtgctaagatttgctgtg-attttatctttag

upper sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G173195_T01 (Zea mays), 5'ss of exon 3
GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtata-gattttgtggctcttgctgtctgattagaatttcattcaagtttttg-tgt-tgctgctta----tcaatgatgtatatt--ttgttgtgcatgt-tgtag-----
  || |||||||||||||||||||||||||||| ||||| || || || ||  |||  || |||||||| ||||||||||||||||| ||||| || ||||| |  | |       | |    ||    ||  ||| ||   | || |    | ||  |  ||||||       | | | |||  |  || || | | | | |||       
ACTGCTGAAAGGTCGCAATGCATGGTATGGGCAGAAGTTAGCTAAGGGAGAACTGACTCTAGAAATGGGGGACAGCATCAAGGGCAAAGGGACTATCCAGgtttgtgctgccaacccaccatttggacaatgtgaagtttgcttaaatgccaggtgccttttgcttaaacgcttaggctatatgctgattcttattcgtttctgtgatctag

upper sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 4
GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatag--attttgtggctcttgctgtctgattagaatttcattcaagtttttgtgttgctgcttatcaatgatgtatattttgttgtgcatgttgtag---
  | || |||||||||||||||||||||||||||| | | ||||| || |||||||| | ||| |||||||| || |||||||| ||||| |  |||||||||  |  ||    |   |||| |  | |  |     |||  |   ||    |||        |||| | |  |  ||   || | |   || |||| |   
TCTCTTAAAAGGTCGCAATGCATGGTATGGGCAAATGCTTGCCAAGGGAGAGTTGAGTCCTGACATGGGTGATAGTATCAAGGGGAAGGGAATGATTCAGgtaatggaatgacttttttctttccattttgtcttgttttattctgagaagatgtcaaagctattat-agtactacatccgttctcgaatat-ttgtcgccc

upper sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G090747_T02 (Zea mays), 5'ss of exon 4
GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattttgtggctcttgctgtctgattagaatttcattcaagtttttgtgttgctgcttatcaatgatgtat---attttgttgtgcatgttgtag-----
 |||||||||||||| ||||||||||||||||| ||||| || ||||| || ||||   | |||||||||||||| || || || || ||||| ||||||||||    ||| |   | | |  | |  |    || ||||   || |   ||  |        || ||| ||||     ||| |  |||    |||  |      
ATTGTTGAAAGGTCGTAATGCATGGTATGGGCAGAAGTTAGCTAAAGGTGAATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgcccttt-taattttggtcgac--aacgaaacttcaaagaactgcatgaatatgcctaaatgaatcatgtgatgaattatcctgttgccgttccatttcag

upper sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 3
GTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattttgtggctct-----tgctgtctgattagaatttcattcaagtttttgtgttgctgcttatcaatgatgtatattttgttgtgcatgttgtag----
 |||||||||||||| |||||||||||||| |||||||| ||  |||||||  |||| |||||||||||||| |||||||||||||||||||  ||||||||||  || ||   | |       |  || ||| | || |  | | |  | |    |||   ||| |     ||| ||  | ||||||  |  |  | | |     
CTTGTTGAAAGGTCGTAATGCATGGTATGGCCAAAAGTTAGCTGAAGGGGAACTGAGTCTTGAAATGGGTGATAGCATCAAGGGCAAGGGGATGATTCAGgtatgtatctttgagttagaaaagtagtgactgttaagcaaataagtacattcccagtgagcctgat-----atgttgagtgttttgt-ataaaaatagaaagtca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014578|gb|CX701320.1|CX701320
EST:     AGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAG                         GGAGTCTCTGCAGTTAAAGCATTCTATGAGCTACTTAGTCAGTCCAGCTTA
genomic: AGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattt ... catgttgtagGGAGTCTCTGCAGTTAAAGCATTCTATGAGCTACTTAGTCAGTCCAGCTTA
EST: gi|193606512|gb|FK557825.1|FK557825
EST:     TGACAGCATCAAGGGCAAGGGGACAATTCAG                         GGAGTCTCTGCAGTTAAAGCATTCTATGAGCTACTTAGTCAGTCCAGCTTA
genomic: TGACAGCATCAAGGGCAAGGGGACAATTCAGgtatagattt ... catgttgtagGGAGTCTCTGCAGTTAAAGCATTCTATGAGCTACTTAGTCAGTCCAGCTTA