1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATTGTAAAAGTGTGGTTTATTCATATCTTTCCAAAAAACTATCATTTGAGGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAGgtatattgtttaactgtttcattcttaatgtaatatattttaagtttagagaggttgtcagtggcatggccaatcatctcattcgtgaataaattgggaa...
species | Glycine max |
transcript | GLYMA12G01200.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAG TTTGTCCTTTGTCTTTAAAGGAGCCAACAGAAGTAATTAATGCATGTCGGAEST: gi|208333182|gb|GE128215.1|GE128215
genomic: GGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAGgtatattgtt ... gcttgtgcagTTTGTCCTTTGTCTTTAAAGGAGCCAACAGAAGTAATTAATGCATGTCGGA
EST: GGCTGCAAATGCTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAG TTTGTCCTTTGEST: gi|207732397|gb|GD709004.1|GD709004
genomic: GGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAGgtatattgtt ... gcttgtgcagTTTGTCCTTTG
EST: GGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAG TTTGTCCTTTGTCTTTAAAGGAGCCAACAGAAGTAATTAATGCATGTCGGAEST: gi|21256995|gb|BQ453883.1|BQ453883
genomic: GGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAGgtatattgtt ... gcttgtgcagTTTGTCCTTTGTCTTTAAAGGAGCCAACAGAAGTAATTAATGCATGTCGGA
EST: GGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAG TTTGTCCTTTGTCTTTAAAGGAGCCAACAGAAGTAATTAATGCATGTCGGA
genomic: GGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAGgtatattgtt ... gcttgtgcagTTTGTCCTTTGTCTTTAAAGGAGCCAACAGAAGTAATTAATGCATGTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGTAAAAGTGTGGTTTATTCATATCTTTCCAAAAAACTATCATTTGAGGCTGCAAATACTGCATTCCGAATACTATCTGCTTGCAAAGTCAACAAAGgtatattgtttaactgtttcattcttaatgtaatatattttaagtttagagaggttgtcagtggcatggccaatcatctcattcgtgaataaattgggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG