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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctatcaactcaatctacaagttcacaagtagcttttataattccaattactggtttcgttaaaattaaaaattcttaagaaaaatgctaatattaaaaaaaatcatattacaaaattaaaaaatctggcag

Basic information

species Glycine max
transcript GLYMA12G01150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01150.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0064g00450.t01 (Vitis vinifera), 5'ss of exon 4
ATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctatcaactcaatctac-aagttcacaagtagcttttataattccaattactggtttcgttaaaattaaaaattcttaagaaaaatgctaatattaaaaaaaatcatattacaaaattaaaaaatctggcag
||| ||||||||| | | ||    |  || ||    |||||||||||  | ||||||||||| || ||| | |||||||| ||||| ||||| ||||||||||    |   |  | | | | | ||  || ||| | |     | |||||    |    || || | |  ||  ||   || | |   |||| || |       |                                 
ATGAATGAAGTTAAACAGCATAGAATGGAAGGTTCCATGTGGACTGTTCTGAAAGGCCGTGTATACAATTTGTCTCCATATATGAAATTTCATCCTGGAGgtatgaattggattttattatgctaaaatctcaactggac---aaaattctgtgtctctgtatcttca--atggaattgtcatgatctaaattctgacgaggtta---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732508|gb|BM527083.1|BM527083
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|22929655|gb|BU546794.1|BU546794
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCNNNGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|197661920|gb|FD480288.1|FD480288
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|192299958|gb|FG992156.1|FG992156
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|192317905|gb|FK010211.1|FK010211
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|192297440|gb|FG989504.1|FG989504
EST:     AAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGGAG                         GTGTTGATATGTTGATG
genomic: AAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGG-AGgtacagctat ... aatctggcagGTGTTGATATGTTGATG
EST: gi|13479751|gb|BG509094.1|BG509094
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|151404917|gb|EV274731.1|EV274731
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAAGCGGTGGGA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGA