1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGgtacgtccctgatggaagtttaaagtatcgagtttctttggacattaatcaagaggacttgtgggatatctttctaccatgtgaactgctctaccaggcttgttagtgtttatttgattttgatgtatttctcgtaaacag
species | Glycine max |
transcript | GLYMA12G01080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG AAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGEST: gi|8825928|gb|BE209658.1|BE209658
genomic: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGgtacgtccct ... tcgtaaacagAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTG
EST: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG AAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGEST: gi|207790870|gb|GD759655.1|GD759655
genomic: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGgtacgtccct ... tcgtaaacagAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTG
EST: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG AAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGEST: gi|192324546|gb|FK018702.1|FK018702
genomic: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGgtacgtccct ... tcgtaaacagAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTG
EST: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAG AAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTG
genomic: TGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGgtacgtccct ... tcgtaaacagAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGgtacgtccctgatggaagtttaaagtatcgagtttctttggacattaatcaagaggacttgtgggatatctttctaccatgtgaactgctctaccaggcttgttagtgtttatttgattttgatgtatttctcgtaaacag
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG