1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtattatttgtattggactggaggcttgtatattgtgctttggctttaatccttttatcttatgcttttgcatttttcttcttctcaag
species | Glycine max |
transcript | GLYMA12G00830.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGGAACCCAAAG AAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAAEST: gi|213591644|gb|DB969744.1|DB969744
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAGACCCAAAG AAACCAAATCTGATGAGGATGAAAATTTACCTTCCATGGAAAGCCTAGAAAEST: gi|7684723|gb|AW755371.1|AW755371
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAGACCCCAAG AAACCAAATCTGATGAGGATGAGEST: gi|192330860|gb|FK021619.1|FK021619
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAG
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAG AAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAAEST: gi|16104976|gb|BI892716.1|BI892716
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAG AAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAAEST: gi|151395552|gb|EV265429.1|EV265429
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAG AAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAAEST: gi|298169552|gb|HO020912.1|HO020912
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCGAAG AAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAAEST: gi|298186631|gb|HO037264.1|HO037264
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGGAACCCAAAG AAACCAAATCTGATGAGGATGAGEST: gi|192324977|gb|FK016133.1|FK016133
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAG
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAG AAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAAEST: gi|151404711|gb|EV274525.1|EV274525
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
EST: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAG AAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
genomic: CGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtatta ... tcttctcaagAAACCAAATCTGATGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtattatttgtattggactggaggcttgtatattgtgctttggctttaatccttttatcttatgcttttgcatttttcttcttctcaag
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