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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatgtggtactctccttgggtttactatccataacatcaattgggttttattcttttctcatttttctttggctaattacaatcctgtcaacactgtag

Basic information

species Glycine max
transcript GLYMA12G00790.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00790.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 2
GAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatg-tggtactctccttgggtttactatccataacatcaattgggttttattcttttctcatttttctttggctaattacaatcctgtcaacactgtag
 ||   ||| | ||| |||||| | || |||||  | ||||||||||||||||||||||| |||||||| ||||||||   |||  | ||||| ||| | ||||  |  | |||  |||  |||   ||  | | |     ||  |     |||  | |  || |||| |      || ||   ||   || |||      
TAATCTTGCCAGAGGTAAAAGATTGGCACTGTTCCTTGATTATGATGGAACTCTTTCACCGATTGTGGACAATCCTGAAAATGCAGTAATGTCTGACGAGgtattctttttctcctcttatgttctttagtcctcattattatcagtgaaaatttatctggcagttttgt------aaatat--tctattcgacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125626|gb|BG316196.1|BG316196
EST:     CTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAAT                         ATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATT
genomic: CTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatgtggta ... aacactgtagATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATT
EST: gi|18733283|gb|BM527521.1|BM527521
EST:     CTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAAT                         ATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATT
genomic: CTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatgtggta ... aacactgtagATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATT
EST: gi|12774838|gb|BG239704.1|BG239704
EST:     TTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGAC-AT                         ATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATT
genomic: TTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatgtggta ... aacactgtagATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATT