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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctcttggagttagacttaatcacagcgattctgtcattgttttttatgagcatgaagaatttacttttcatagcaaggctttggttaaatggtaattaatttattatttgcag

Basic information

species Glycine max
transcript GLYMA12G00600.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00600.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0013g00350.t01 (Vitis vinifera), 5'ss of exon 2
---ACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctcttggagttagacttaatcacagcgattctgtcattgttttttatgagcatgaagaatttacttttcatagcaaggctttggttaaatggtaattaatttattatttgcag
   ||| ||||||||||||| ||| |||||||||||| ||||   ||| || || ||||||||||  || || |||||||||||||| || |||||||||||||| ||  |  ||    |  |||  | |||     |||  || |   |||| ||  | |  ||||| |   | |  |     | ||  |  | |  |||  |    |   |         
GATACAACAAAGAATTAAAAATGCTGAACTTGGAATTCTAAA---AGAACAGGAAAATGAACTCCAAAATTTTCCATCATTCATTCCATTTTTGCCTCCTTTGgtgagctttctga---tgaact--accac-----ttccctc-taaattttcatttgaaccaagaaatgtgtatcaagctataagccatcctcatgtggggacccttccttc--------

upper sequence: GLYMA12G00600.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0013g00290.t01 (Vitis vinifera), 5'ss of exon 3
ACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctcttggagttagacttaatcacagcgattctgtcattgttttttatgagcatgaagaatttacttttcatagcaaggctttggttaaatggtaattaatttattatttgcag
||| ||||||||||||||||| |||||||||||| |||| ||||| ||||| |||||||| || || || |||||||||||||| || |||||||||||||| ||  |  ||    |  |||  | |||     |||   | |   |||| ||  | |  |||||| |   |        ||| |  |  ||| |||   |     ||  |  |     
ACAACAAAGAATTAAAAGTGCTGAACTTGGAATTCTAAAAGAAGAACAAGAAAATGAACTTCCAAATTTTCCATCATTCATTCCATTTTTGCCTCCTTTGgtgagctttctga---tgaact--accac-----ttcccac-taaattttcatttgaaccaagaatgtgtatcaagctataag-ccatccttacatgaggacc--cttcctgct-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491443|gb|EH219610.1|EH219610
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|6566524|gb|AW234167.1|AW234167
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|7924908|gb|AW830934.1|AW830934
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|19269603|gb|BM885859.1|BM885859
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|13479753|gb|BG509096.1|BG509096
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|33389909|gb|CA853116.1|CA853116
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|298167160|gb|HO010599.1|HO010599
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|13480083|gb|BG509426.1|BG509426
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|22525484|gb|BU084295.1|BU084295
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|33389270|gb|CA852477.1|CA852477
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|12689436|gb|BG155833.1|BG155833
EST:     AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|192307757|gb|FK001701.1|FK001701
EST:     CATTCATTCCTTTCTTGCCTCCTTTG                         ACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: CATTCATTCCTTTCTTGCCTCCTTTGgtaagtctct ... ttatttgcagACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC