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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTATTGGAGGTGGTCAGGATGCGTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgtttgcttttcttcctagactatgttgtgtactgtgatgatattgaatgtctacttattttgcttccttttttttttcatttgattag

Basic information

species Glycine max
transcript GLYMA12G00510.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00510.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G46280.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGGTTATTGGAGGTGGTCAGGATGCGTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgtttgct-----tttcttcctagactatgttgtgtactgtgatgatattgaatgtctacttattttgcttccttttttttttcatttgat-tag
|| ||  ||||||||||||| ||||| |||||||| || || ||||||||||||||||| || |||||||| || || |  |||||||| ||| | | |  |     | | || || |   |  | ||   ||| ||  |||   |   |  | | |   ||  || || | |||   ||   || |||
GTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAGgttagtgtttataataagagtgttttacttggaaacat-gtaacctg-gaaaatacacatatttaaataaccgtgtatcattgtgtttggtataatatatag

upper sequence: GLYMA12G00510.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G46290.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGTTATTGGAGGTGGTCAGGATGCGTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagt-ttgt--ttgcttttcttcctagactatgttgtgtactgtgatgatattgaatgtctacttattttgcttccttttttttttcatttgattag
|| ||  ||||||||||||| ||||| |||||||| || || ||||||||||||||||| || |||||||| || || |  |||| ||| ||| |||   |        ||  |  |  |  ||||   |||  | || ||    |  ||   ||||| |  |  |  | | |             
GTTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGgttagtgttgcagtaaaacagttttatttaaaaacttgtaacctggaaagagat-atgtaactgtgtatttggtcttataatatatag-----------

upper sequence: GLYMA12G00510.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G46280.3 (Arabidopsis thaliana), 5'ss of exon 5
-------------GTGGTTATTGGAGGTGGTCAGGATGCGTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgtttgct-----tttcttcctagactatgttgtgtactgtgatgatattgaatgtctacttattttgcttccttttttttttcatttgat-tag
             || ||  ||||||||||||| ||||| |||||||| || || ||||||||||||||||| || |||||||| || || |  |||||||| ||| | | |  |     | | || || |   |  | ||   ||| ||  |||   |   |  | | |   ||  || || | |||   ||   || |||
CTCTCTCTTTTAGGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAGgttagtgtttataataagagtgttttacttggaaacat-gtaacctg-gaaaatacacatatttaaataaccgtgtatcattgtgtttggtataatatatag

upper sequence: GLYMA12G00510.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 6
GTGGTTATTGGAGGTGGTCAGGATGCGTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgtttgcttttcttcctagactatgt-tgtgtactgtgatgatattgaatgtctacttattttgcttcctttttttttt-catttgattag
|| ||  | ||||||||||| ||||| |||  ||| ||||| ||||||||||||||||| || ||||| || ||||||| ||| |||||||  | | |  || |   |    |  | ||| |||||  ||||    | |  | ||| |  |   ||   |   || | ||  | |||||||||||
GTAGTACTAGGAGGTGGTCAAGATGCATCACATGTCACAACAACTGATCATCGTGCTGGAAAGTTTGAGGCAAAATTCTATGATAAGgtaa--tagatatctatatatatctgtgtgtgtgtgtgtg-tgtgtgtgtgtaaactgt-tgttgggttaattaaattatattcctgcatttgattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207748191|gb|GD721778.1|GD721778
EST:     TCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208251911|gb|GE045070.1|GE045070
EST:     GTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|9203630|gb|BE329854.1|BE329854
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193684082|gb|FK622618.1|FK622618
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193654963|gb|FK599585.1|FK599585
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|207835942|gb|GD806023.1|GD806023
EST:     CTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|105633761|gb|DW247124.1|DW247124
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193551652|gb|FK508521.1|FK508521
EST:     TGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTCGGACCAATTAAT
genomic: TGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193439736|gb|FK407605.1|FK407605
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|207809184|gb|GD781818.1|GD781818
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193464097|gb|FK427909.1|FK427909
EST:     GTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: GTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|192308991|gb|FK001767.1|FK001767
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|209727428|gb|BW663714.1|BW663714
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193474582|gb|FK439277.1|FK439277
EST:     TCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: TCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208109862|gb|GD906208.1|GD906208
EST:     ACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: ACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208147091|gb|GD949322.1|GD949322
EST:     ATTCTTTGACAAG                         ATTCTTCAAGAAGAAATT-GGGGTGTGAAAGGCCATTTTGGATCAATTAAT
genomic: ATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193545569|gb|FK502662.1|FK502662
EST:     ACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: ACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208259030|gb|GE055421.1|GE055421
EST:     CTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208309163|gb|GE106749.1|GE106749
EST:     TCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGGTGTGAAAGGCCACTTTGGACCAATTAA
genomic: TCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATT-GGGGGTGTGAAAGGCCATTTTGGACCAATTAA
EST: gi|192329075|gb|FK021428.1|FK021428
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208155999|gb|GD954517.1|GD954517
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|207805444|gb|GD776890.1|GD776890
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193482531|gb|FK446538.1|FK446538
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|207749721|gb|GD718101.1|GD718101
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193630705|gb|FK585028.1|FK585028
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193672666|gb|FK615984.1|FK615984
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193495670|gb|FK459412.1|FK459412
EST:     CGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193577140|gb|FK537469.1|FK537469
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTG
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTG
EST: gi|207801078|gb|GD772457.1|GD772457
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAA
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAA
EST: gi|193698998|gb|FK635477.1|FK635477
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|22525375|gb|BU084186.1|BU084186
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208286661|gb|GE085235.1|GE085235
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193556002|gb|FK515621.1|FK515621
EST:     ATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: ATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|193641864|gb|FK591108.1|FK591108
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|22928110|gb|BU545249.1|BU545249
EST:     CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208137112|gb|GD935886.1|GD935886
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|207795025|gb|GD765364.1|GD765364
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT
EST: gi|208274939|gb|GE068501.1|GE068501
EST:     CAACTACTGATCATCGTGCTGGCAAATTCGAAGCCAAATTCTTTGACAAG                         ATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCACTTTGGACCAATTAAT
genomic: CAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgt ... atttgattagATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTTATTGGAGGTGGTCAGGATGCGTCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGACAAGgtaagtttgtttgcttttcttcctagactatgttgtgtactgtgatgatattgaatgtctacttattttgcttccttttttttttcatttgattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC