Sequence
atgc intronic sequence ATGC exonic sequenceATGTCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAAAGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGgtaactggacgactattttacattctgtctttgacagcaatcatgatgatttttaacattttattgcatcagctccactaagtttgaataagggaagcat...
Basic information
species | Glycine max |
transcript | GLYMA11G37760.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G37760.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g33420.1 (Oryza sativa), 5'ss of exon 4
ATGTCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAAAGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGgtaactggacgac--tattttacattctgtctttgacagcaatcatgatgatttttaacattt---tatt--gcatcagct--ccactaagtttgaataagggaagcat----------------------------------------------
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ATGCCACATGGATTTATGAGTGTAAATACTGATATTGGAGCTGGAAAGGCCTTCCTAAGATCTCTTTATCAACAGTACGCTGATTGGGGTGTTGATTTTGgtattcttatagcataattcttcagtttagttattacaactgtgaggactgtgtagaaagatcatatattaggcagtagatgatcattttcatgtcataccgaaactgaaatttattctgatggtttcatttgtaccattctgttctgttcacag
upper sequence: GLYMA11G37760.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G028307_T01 (Zea mays), 5'ss of exon 4
ATGTCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAAAGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGgtaactggacgactattttaca-ttctgtctttgaca-gcaatcatgatgattttt-aacattttattgcatcagctccactaagt-ttgaataagggaagcat----------------------
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ATGACTCATGGATTTATGAGTGTTAATACAAATATTGGAGCTGGAAGGGCCTTCTTAAGATCTCTTTATCGACAATATGCTGATTGGGGTGTTGATTTTGgtat---gcttattcttgcatggttctgtggatagcatacatgtatctcaactcttgaacctttccatctgctgccaaaactgaggattgaataaattcatattgaccattctgttttgtttgcag
upper sequence: GLYMA11G37760.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 4
ATGTCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAAAGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGgtaactggacgactatt---ttacattctgtctttgacagcaatcatgatgatttttaacattttattgcatcagctccactaagtttgaataagggaagcat
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ATGCCTCATGGTTTCATGAGTGTAAATACCAATTTGGGAGCTGGAAGGGCCTTCTTGAGATCACTATATAAACAGTATGCTGAGTGGGGTGTTGACTTTGgtaatttgacactttttagttgaaagtcatcctctcatcctcatt-tgtctttttttactattacaatatatagagctgtatgatcttcaataatgtgttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6342037|gb|AW164861.1|AW164861EST: TTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTG TGAAACATGACTGCGTATTCGGGGATGACTTTGATTTAAATGAAATAAGCT
genomic: CTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGgtaactggac ... ttccatgcagTGAAACATGACTGCATATTCGGGGATGACTTTGATTTAAATGAAATAAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAAAGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGgtaactggacgactattttacattctgtctttgacagcaatcatgatgatttttaacattttattgcatcagctccactaagtttgaataagggaagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC