1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGgtaactagcacccctaatttgtttcttctgttgtggttctcttttcatatcttagaagctgtagagaaaaatgtcaatttcattgtttacttgggaatta...
species | Glycine max |
transcript | GLYMA11G37380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTG AATGGCTTGTATCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCAEST: gi|192309938|gb|FK001482.1|FK001482
genomic: AGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGgtaactagca ... ttttgaaaagAATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCA
EST: AGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTG AATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCAEST: gi|24206284|gb|BU965537.1|BU965537
genomic: AGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGgtaactagca ... ttttgaaaagAATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCA
EST: AGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTG AATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCA
genomic: AGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGgtaactagca ... ttttgaaaagAATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGgtaactagcacccctaatttgtttcttctgttgtggttctcttttcatatcttagaagctgtagagaaaaatgtcaatttcattgtttacttgggaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaaa