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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGGTGACATAATGATCTCATGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatctagaagctagagttttgtaaaactgtttacacagaatcgtttaataattgcttgtgcattgaacagtacatcatttacatgtgttatatcattgactagcaacaattctatttgaaactacctatgttagcatttcaatatcaaaatttctaattatattatattgtattctgcttcacattggttag

Basic information

species Glycine max
transcript GLYMA11G36670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 3
CTTCTGGTGACATAATGATCTCATGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatctagaagctagagttttgtaaaactgtttacacagaatcgtttaataattgcttgtgcattgaacagtacatcatttacatgtgttatatcattgactagcaacaattctatttgaaactacctatgttagcatttcaatatcaaaatttctaattatattatattgtattctgcttcacattggttag
|||||||||| |||||| | ||||| |||||||||  ||||||||| |||| ||||| |||||||||||| ||||| ||||| || |||||||| ||||||| ||| |  | |        |   ||  |       |||||    | ||| | | ||   |   |||  | |  | ||  ||||     |  || | ||| |  |                                                                                           
CTTCTGGTGATATAATGGTTTCATGCCTTGGAGATGGAGATGGAAAAGCTGAAGGAAGTGGATTTCTTCTACTTGACTCAGAATTCAATGTGAAAGGAAGgt-ctctttcacacatccacatacagtgca--caagcacacactcccttttcacattt---ttaacataaatctatgca--atttgagaattgtaga-catgggttttt----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814252|gb|BI786527.1|BI786527
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
EST: gi|18726732|gb|BM523722.1|BM523722
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
EST: gi|308099231|gb|HO761409.1|HO761409
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGT
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGT
EST: gi|213604534|gb|DB970654.1|DB970654
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA