Sequence
atgc intronic sequence ATGC exonic sequenceTAATATGGGTATGATTTCCTTAAGGAATGCATATCATGGAGGAAGTTCTAGTACAATTGGACTCACCGCGATGAACACATGGAAATACCCAATACCAGAGgtttgtccacacacacaaacacgtgtatatatgtatccaaaaaaacacacaaacatgtatatcattgtaacctactccatgctactctagttgtaaccat...
Basic information
species | Glycine max |
transcript | GLYMA11G36000.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G36000.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G39660.1 (Arabidopsis thaliana), 5'ss of exon 3
TAATATGGGTATGATTTCCTTAAGGAATGCATATCATGGAGGAAGTTCTAGTACAATTGGACTCACCGCGATGAACACATGGAAATACCCAATACCAGAGgtttgtccacacacacaaacac---gtgtatatatgtatccaaaaaaacacacaaacatgtatatcattgtaacctactcc--atgcta----ctctagttgtaaccat--------------------------------------------------------------------------------------------
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TAGCCTTGAGATGATTTCCTTGAGAAATGCTTATCATGGTGGAAGTTCCAATACTATTGGACTAACTGCTCTTAACACATGGAAGTACCCATTACCTCAGgttt-tccccagagactttcatttaatgaattgattcctcttcaaagttgagatattttctttagcattgatttttgcctctcaagccgagtctttcatctttagcctcgttttagacccatcagaataaaattctctgcaaagtagttctctgccatagactgcttgtaaattttggttgccaattctgttattgtgcag
upper sequence: GLYMA11G36000.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 3
TAATATGGGTATGATTTCCTTAAGGAATGCATATCATGGAGGAAGTTCTAGTACAATTGGACTCACCGCGATGAACACATGGAAATACCCAATACCAGAGgtttgtccacacacacaaacacgtgtat-atatgtatccaaaaaaacacacaaacatgtatatcattgtaacctactccat-gctactctagttgta-accat
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TAATCTTGGTATGATTTCCTTAAGAAATGCATATCATGGTGGAAGTTCTGGTACAATTGGACTCACTGCTCTGAACACGTGGAAGTACTCAATACCAGAGgtttgtttgaccac-tagtggtgcaaatgattcatgcttgttcacttcttttggctcacaaaat-ttgctgccaatttaattgttgatgaagaggcacaaca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7640373|gb|AW734676.1|AW734676EST: GTACAATTGGACTCACCGCGATGAACACATGGAAATACCCAATACCAGAG GGAGAAGTTCATCATATCATGAATCCAGATCCATACCGTGGAATCTTTGGC
genomic: GTACAATTGGACTCACCGCGATGAACACATGGAAATACCCAATACCAGAGgtttgtccac ... actcttcaagGGAGAAGTTCATCATATCATGAATCCAGATCCATACCGTGGAATCTTTGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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TAATATGGGTATGATTTCCTTAAGGAATGCATATCATGGAGGAAGTTCTAGTACAATTGGACTCACCGCGATGAACACATGGAAATACCCAATACCAGAGgtttgtccacacacacaaacacgtgtatatatgtatccaaaaaaacacacaaacatgtatatcattgtaacctactccatgctactctagttgtaaccat
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