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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGAAAAGGGTCCCGCATCATCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGgtaaaacttatgaggcatgccctaatgctgtagtttaaatgtaactttgctatccaatgatttcattttctcatcttagtagcagaatcatttcaatatt...

Basic information

species Glycine max
transcript GLYMA11G35640.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g01900.t01 (Vitis vinifera), 5'ss of exon 3
TGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGAAAAGGGTCCCGCATCATCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGgtaaaacttatgaggcatgccctaatgctgtagtt-taaatgtaactttgctatccaatgatttcattttctcatcttagtagcagaatcatttcaatatt-
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TGTGAGGGTTGAAGTTCGAGCAGAGGCAAAATCACTTAATGATTCTGTATCATCACAACAATTAGCTTCTTCTAAAACACCTTCAGGCCTTAACATCGAGgtatctgtcagtttatccagttacagcctacatttgtaaatttaagttccttactt--tgatcctttttttttgtaaatttcatattatgtgtgtgatgcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193672854|gb|FK619850.1|FK619850
EST:     CGTCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAG                         TACTTGGAATGCGAGGAAGATAAGAAGCCATCACAGCTACTAGATATCCTT
genomic: CATCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGgtaaaactta ... gagtttgcagTACTTGGAATGCGAGGAAGATAAGAAGCCATCACAGCTACTAGATATCCTT