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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCTGTGAAAACCATGAAGgtctaacaaagcaaacttttgatgaaactatatttaaataaaggttttcaattttttctcatgcttatctgctaattttgccag

Basic information

species Glycine max
transcript GLYMA11G34120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G34120.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g62610.1 (Oryza sativa), 5'ss of exon 5
AGTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCTGTGAAAACCATGAAGgtctaacaaagcaaacttttgatgaaactatatttaaataaaggttttca-attttttctcatgcttat----ctgctaattttgccag-----
||| ||||||||||| |||||||| ||| || ||||||| || || |||||| |||| | ||| |||||||| ||||| || || |||||||| ||||||||  ||       |||| ||    |    || | | |  ||  |     | | || || |  || | ||     || ||| || | ||      
AGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGgt--aaatggatgaactgttcgctagttcat-tatgatcaatagcccaaacagttcttttgctgataatactgttgttaaattggacacctgag

upper sequence: GLYMA11G34120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g01900.t01 (Vitis vinifera), 5'ss of exon 3
AGTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCTGTGAAAACCATGAAGgtctaacaaagcaaact-tttgatgaaactatattta----aataaaggttttcaattttttct-catg--cttatctgctaattttgccag
||||||||||||||||||||| ||||| ||  | ||||| || ||| |||| || |||| ||| || ||||| ||||| |||||| ||||||| ||||||||  | | |  |  ||   || ||    | |||| |       | || |||   | ||  |  | ||||  ||| | || |  || | ||||
AGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctattcttacagctttatcttgccatatcttttctggttaaagttgaaagttcctgttacatgttcttttatgttgtttcttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208087121|gb|GD887169.1|GD887169
EST:     GAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCTGTGAAAACCATGAAG                         GTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCNGT
genomic: GAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCTGTGAAAACCATGAAGgtctaacaaa ... attttgccagGTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGT
EST: gi|208202125|gb|GD998728.1|GD998728
EST:     TGGGAAATTGCTGTGAAAACCATGAAG                         GTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGT
genomic: TGGGAAATTGCTGTGAAAACCATGAAGgtctaacaaa ... attttgccagGTTGGAGAAGTTGCAAAAATAACTTGCAAGCCAGAATATGCATATGGCAGT